View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8126_low_2 (Length: 400)
Name: NF8126_low_2
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8126_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 40378624 - 40378242
Alignment:
| Q |
18 |
ggataatcaacacttatgggctttctccctgaaagaagctcaagaagcacaacaccaaatgcatagacgtcgatcttatcatttactttgccgtacatga |
117 |
Q |
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| T |
40378624 |
ggataatcaacacttatgggctttctccctgaaagaagctcaagaagcacaacaccaaatgcatagacgtcgatcttatcatttactttgccgtacatga |
40378525 |
T |
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| Q |
118 |
agtattcaggagccatataactgcataaacaggtgcaatacataactcaggatcgctctaaaaacgttttctgctgcatgtatggttaagaacggatgat |
217 |
Q |
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| T |
40378524 |
agtattcaggagccatataactgcataaacaggtgcaatacatgattcaggatcgctctaaaaacgttttctgtagcatgtatggataagaacggatgat |
40378425 |
T |
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| Q |
218 |
aagtttttgatggatttcaaagtactaacccaaaagttccagcaacatctgtgcacgttatatgcgatgatgacgttgatgcccacgtagccaatccaaa |
317 |
Q |
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| T |
40378424 |
aagtttttgatggatttcaaattactaacccaaaggttccagcaacatctgtgcacgttatatgagatgatgaagttgatgcccacgtagccaatccaaa |
40378325 |
T |
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| Q |
318 |
atcagagagctgaataaaatcaaagtagaccaacataaggattgattaatacaaataattcgaaatattaaaatccaatcaat |
400 |
Q |
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| T |
40378324 |
atcagagagctgaataaaatcaaagcagaccagcataaggattgattaatacaaataattcgaaatattaaaagccaatcaat |
40378242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 10260087 - 10259958
Alignment:
| Q |
17 |
aggataatcaacacttatgggctttctccctgaaagaagctcaagaagcacaacaccaaatgcatagacgtcgatcttatcatttactttgccgtacatg |
116 |
Q |
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| T |
10260087 |
aggataatcgccacttataggctttctccgtgtaagaagctcaagaagcaccacaccaaatgcatagacatcaatcttatcatttactttaccatacatg |
10259988 |
T |
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| Q |
117 |
aagtattcaggagccatataactgcataaa |
146 |
Q |
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| T |
10259987 |
aaatattcaggtgccaagtaactgcataaa |
10259958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 10259861 - 10259778
Alignment:
| Q |
245 |
acccaaaagttccagcaacatctgtgcacgttatatgcgatgatgacgttgatgcccacgtagccaatccaaaatcagagagct |
328 |
Q |
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| T |
10259861 |
acccaaaagttccggcaacatctgtgcaggttatagatgatgacgaggttgatgcccatttcgcaagtccaaagtcagagagct |
10259778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 27669920 - 27669993
Alignment:
| Q |
57 |
tcaagaagcacaacaccaaatgcatagacgtcgatcttatcatttactttgccgtacatgaagtattcaggagc |
130 |
Q |
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| T |
27669920 |
tcaagtagcactacaccgaaggcatagacatctatcttgtcactaacttttccatacatgaagtattcaggagc |
27669993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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