View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8126_low_3 (Length: 385)
Name: NF8126_low_3
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8126_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 191
Target Start/End: Complemental strand, 40925306 - 40925154
Alignment:
| Q |
40 |
aaattaaaataacaacctttgattttttaactttaacacgtccaattttaaaaaatgttcatctatacttgatttccctccctttcctatttttagaa-a |
138 |
Q |
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| T |
40925306 |
aaattaaaataacaacctttgattttttaactttaacacgtccaattctaaaaaatgttcatctatacttgatttccctccctttcctttttttagaaaa |
40925207 |
T |
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| Q |
139 |
aaaggatttatcctcttgggttatcttcactttttgtgaacccttgcaaatta |
191 |
Q |
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| T |
40925206 |
aaaggatttatcctcttgggttatcttcactttttgtgaacccttgcaaatta |
40925154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 40925364 - 40925333
Alignment:
| Q |
19 |
taatatcaatctttaattaataaattaaaata |
50 |
Q |
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| T |
40925364 |
taatatcaatctttaattaataaattaaaata |
40925333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 8158785 - 8158875
Alignment:
| Q |
207 |
tgatttaaatcaaacatctcattcctattacaagtttttatttgcttcgtttcccactatattacaaatagttattattacatttcttcttgtgt |
301 |
Q |
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| T |
8158785 |
tgatttaaatcaaacatctcattgttattactaatttttatttatttc-tatcccactatattactaatag---ttgttacatttcttcttgtgt |
8158875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 8149604 - 8149651
Alignment:
| Q |
207 |
tgatttaaatcaaacatctcattcctattacaagtttttatttgcttc |
254 |
Q |
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| T |
8149604 |
tgatttaaatcaaacatctcaatggtattacaaatttttatttgcttc |
8149651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 8154030 - 8154074
Alignment:
| Q |
321 |
attaagcatataattctacccctacaagacggttgccacacctttt |
366 |
Q |
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| T |
8154030 |
attaagcatatc-ttctactcctacaagacggttgccacacctttt |
8154074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 8153822 - 8153854
Alignment:
| Q |
204 |
aattgatttaaatcaaacatctcattcctatta |
236 |
Q |
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| T |
8153822 |
aattgatttaaatcaaacatctcattactatta |
8153854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 8153887 - 8153945
Alignment:
| Q |
241 |
tttttatttgcttcgtttcccactatattacaaatagttattattacatttcttcttgtgttt |
303 |
Q |
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| T |
8153887 |
tttttatttacttcgtt-cacactatattacaagtagttat---tacatttcttcttgtgttt |
8153945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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