View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8126_low_4 (Length: 385)
Name: NF8126_low_4
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8126_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 40666539 - 40666924
Alignment:
| Q |
1 |
acttagaggatgagactattgatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctct |
100 |
Q |
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| T |
40666539 |
acttagaggatgagactattgatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctct |
40666638 |
T |
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| Q |
101 |
acgcgaaactgttagtttt-ttatacgactcctatatttagaaatcattagttgattacttcatcagtcaatgggtcattccttttttgctgtctgtttt |
199 |
Q |
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| T |
40666639 |
acgcgaaactgttagtttttttatacgactcctatatttagaaatcattagttgattacttgatcagtcaatgggtcattccttttttgctgtctgtttt |
40666738 |
T |
|
| Q |
200 |
cttacgaatgtctgtattaacaggttgttgaggtgcctagtgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcag |
299 |
Q |
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| T |
40666739 |
cttacgaatgtctgtattaacaggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcat |
40666838 |
T |
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| Q |
300 |
aaatctttcctaatacttaattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagaatgttc |
385 |
Q |
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| T |
40666839 |
aaatctttcctactacttaattacacctgatttccttactagttttacctgtttctgattttggtttgtgtgtacgtagactgttc |
40666924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 40723467 - 40723081
Alignment:
| Q |
1 |
acttagaggatgagactattgatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
40723467 |
acttagaggatgagactattgatgctgaaatactaaattctatggcagttacaaatgagcatttccataccgcacttggaacaagcaacccatcagctct |
40723368 |
T |
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| Q |
101 |
acgcgaaactgttagttttttata--cgactcctatatttagaaatcattagttgattacttcatcagtcaatgggtcattccttttttgctgtctgttt |
198 |
Q |
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||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
40723367 |
acgtgaaactgttagtgttttctttccgactcctatatttagaaatcattagttgattacttgatcagtcaatgagtcattccttttttgttgtctgttt |
40723268 |
T |
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| Q |
199 |
tcttacgaatgtctgtattaacaggttgttgaggtgcctagtgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtca |
298 |
Q |
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| T |
40723267 |
tcttacgaatgtctgtattaacatgttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtca |
40723168 |
T |
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| Q |
299 |
gaaatctttcctaatacttaattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagaatgttc |
385 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40723167 |
gaaatctttcttagtacttaattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagactgttc |
40723081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 41092450 - 41092395
Alignment:
| Q |
9 |
gatgagactattgatgctgaaatactaaattccatggcagttacaaatgagcattt |
64 |
Q |
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| T |
41092450 |
gatgagacaattgatgctgaaatattgaactccatggcagtgacaaatgagcattt |
41092395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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