View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8126_low_5 (Length: 371)

Name: NF8126_low_5
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8126_low_5
NF8126_low_5
[»] chr1 (14 HSPs)
chr1 (210-322)||(12885647-12885759)
chr1 (15-140)||(12885457-12885582)
chr1 (21-140)||(12955999-12956118)
chr1 (15-140)||(12950243-12950368)
chr1 (27-140)||(12914627-12914740)
chr1 (17-133)||(12921937-12922053)
chr1 (25-140)||(12942585-12942700)
chr1 (210-289)||(12942445-12942524)
chr1 (210-289)||(12950103-12950182)
chr1 (210-322)||(12922143-12922253)
chr1 (210-289)||(12955862-12955941)
chr1 (15-140)||(12992219-12992344)
chr1 (27-131)||(12893758-12893862)
chr1 (221-319)||(12915013-12915114)
[»] chr8 (2 HSPs)
chr8 (24-109)||(14073726-14073811)
chr8 (61-109)||(14069378-14069426)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 12885647 - 12885759
Alignment:
Q  210 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtacatacataaacacaaaatggta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12885647 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtacatacataaacacaaaatggta 12885746  T
Q  310 gtatctaatctaa 322  Q
    |||||||||||||    
T  12885747 gtatctaatctaa 12885759  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 12885457 - 12885582
Alignment:
Q  15 atgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactccttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  12885457 atgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcattacttccttttttcataaactccttt 12885556  T
Q  115 ggtacactctgcaaatacaaataaaa 140  Q
    ||||||||||||||||||||| ||||    
T  12885557 ggtacactctgcaaatacaaacaaaa 12885582  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 12956118 - 12955999
Alignment:
Q  21 actctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttggtaca 120  Q
    |||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||    
T  12956118 actctcgtaatagttcacttttacgaaccatgactttctccccattttcaactccacaatattttcatgacatcctcttttcataaactcctttggtaca 12956019  T
Q  121 ctctgcaaatacaaataaaa 140  Q
    ||||||||||||||| ||||    
T  12956018 ctctgcaaatacaaacaaaa 12955999  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 12950368 - 12950243
Alignment:
Q  15 atgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactccttt 114  Q
    ||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| || ||   |||||||||||||||||    
T  12950368 atgaatactctcataataattgacttttacaaaccatgactttctccccatttttaactccacaatattttcattacatcctcttttcataaactccttt 12950269  T
Q  115 ggtacactctgcaaatacaaataaaa 140  Q
    || |||| ||||||||||||| ||||    
T  12950268 ggcacaccctgcaaatacaaacaaaa 12950243  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 12914627 - 12914740
Alignment:
Q  27 ataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttggtacactctgc 126  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||| ||||    
T  12914627 ataaaaattgacttttacaaaccatgactttctccccattttcaactccacaatattttcattacatccttttttcataaactcctttggtacacactgc 12914726  T
Q  127 aaatacaaataaaa 140  Q
    | ||||||| ||||    
T  12914727 agatacaaacaaaa 12914740  T

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Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 12921937 - 12922053
Alignment:
Q  17 gaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttgg 116  Q
    |||||||||| |||||||||||||||||||||||||||| ||  |||| ||||||||||| |||||||||||||||||     |||||||||||||||||    
T  12921937 gaacactctcgtaataattgacttttacgaaccatgactgtccccccactttcaactccaaaatattttcatgacttcctccgttcataaactcctttgg 12922036  T
Q  117 tacactctgcaaataca 133  Q
    |||| ||||||||||||    
T  12922037 tacagtctgcaaataca 12922053  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 12942700 - 12942585
Alignment:
Q  25 tcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttggtacactct 124  Q
    |||||||| || ||||||||| ||||||||||||  ||||||||||| ||||| |||||||||| || ||   |||||||||||||||||||||||||||    
T  12942700 tcataatagttcacttttacgtaccatgactttccccccattttcaattccacgatattttcattacatccccttttcataaactcctttggtacactct 12942601  T
Q  125 gcaaatacaaataaaa 140  Q
    ||||||||||| ||||    
T  12942600 gcaaatacaaacaaaa 12942585  T

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Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 12942524 - 12942445
Alignment:
Q  210 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtaca 289  Q
    ||||||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  12942524 gtaattaatcctaccggggcattgttcttcaccataaccttgaatgtgttatgcttcatcacatcaggaccttctgtaca 12942445  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 12950182 - 12950103
Alignment:
Q  210 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtaca 289  Q
    ||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  12950182 gtaattaatcctaccggggatgtgttcttcaccaaaaccttaaatgtgttatgcttcatcacattaggaccttctgtaca 12950103  T

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Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 12922143 - 12922253
Alignment:
Q  210 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtacatacataaacacaaaatggta 309  Q
    |||||||||||||||||| || | |||||||||| |||||| || |||||||||| | ||  ||||||||||||||||||| |||||||||||||||  |    
T  12922143 gtaattaatcctaccggaactctattcttcaccataaccttgaacgtgttatgctccttccaatcacgaccttctgtacatgcataaacacaaaatg--a 12922240  T
Q  310 gtatctaatctaa 322  Q
    || ||||||||||    
T  12922241 gtgtctaatctaa 12922253  T

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Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 12955941 - 12955862
Alignment:
Q  210 gtaattaatcctaccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgaccttctgtaca 289  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||| |   |||||||||||||| |||||||||||||    
T  12955941 gtaattaatcctaccggagctgtgttcttcaccaaaaccttgaatgtatatggcttcatcacatcaggaccttctgtaca 12955862  T

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Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 12992344 - 12992219
Alignment:
Q  15 atgaacactctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactccttt 114  Q
    ||||| ||| ||||||||||| ||||||||  |||||||   ||  |||||||||||||||| ||  |||||||||||||   |||||||||||||||||    
T  12992344 atgaatactatcataataattcacttttacagaccatgatcgtccccccattttcaactccagaaagttttcatgacttcctcttttcataaactccttt 12992245  T
Q  115 ggtacactctgcaaatacaaataaaa 140  Q
    || ||| |||||||||||||| ||||    
T  12992244 ggaacattctgcaaatacaaacaaaa 12992219  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 12893758 - 12893862
Alignment:
Q  27 ataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaactcctttggtacactctgc 126  Q
    ||||||||| ||||||| ||||||||| | | | || |||||||||||||||| ||||||||||| ||   |||||||||| || |||||||||  ||||    
T  12893758 ataataattcacttttatgaaccatgattgtatccctattttcaactccacaagattttcatgacatcctcttttcataaattcatttggtacatcctgc 12893857  T
Q  127 aaata 131  Q
    |||||    
T  12893858 aaata 12893862  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 12915013 - 12915114
Alignment:
Q  221 taccggagctttgttcttcaccaaaaccttcaatgtgttatgcttcatcacatcacgac---cttctgtacatacataaacacaaaatggtagtatctaa 317  Q
    |||||| | |||||||||||  |||||||| ||||| ||||||| | ||||||||||||   ||||||||||| |||||||||||||||  |||| ||||    
T  12915013 taccggggttttgttcttcaagaaaaccttgaatgtcttatgctccttcacatcacgaccttcttctgtacatgcataaacacaaaatgacagtacctaa 12915112  T
Q  318 tc 319  Q
    ||    
T  12915113 tc 12915114  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 14073811 - 14073726
Alignment:
Q  24 ctcataataattgacttttacgaaccatgactttcttcccattttcaactccacaatattttcatgacttctatttttcataaact 109  Q
    ||||||| | |||||||||||||||||||| | ||   |||||||||||| |||||||||||||| |  ||  |||||||||||||    
T  14073811 ctcataaaatttgacttttacgaaccatgattatccctccattttcaactacacaatattttcataagatccctttttcataaact 14073726  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 14069426 - 14069378
Alignment:
Q  61 cccattttcaactccacaatattttcatgacttctatttttcataaact 109  Q
    |||||||| |||||||||||||||||||||| ||   ||||||||||||    
T  14069426 cccattttgaactccacaatattttcatgacatccccttttcataaact 14069378  T

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