View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8126_low_7 (Length: 365)

Name: NF8126_low_7
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8126_low_7
NF8126_low_7
[»] chr3 (9 HSPs)
chr3 (20-365)||(27045301-27045646)
chr3 (20-243)||(27098038-27098258)
chr3 (20-244)||(27105037-27105258)
chr3 (19-187)||(27069312-27069480)
chr3 (19-185)||(27062245-27062411)
chr3 (19-111)||(27040961-27041053)
chr3 (33-111)||(27079615-27079693)
chr3 (33-111)||(27085412-27085490)
chr3 (308-365)||(27069598-27069655)
[»] chr6 (2 HSPs)
chr6 (20-95)||(19414049-19414124)
chr6 (130-183)||(19414159-19414212)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 27045301 - 27045646
Alignment:
Q  20 ggcatggcagcaacagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcaccctt 119  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27045301 ggcatggcagcaacagggagtgatgtaaaaatcttaactcctcctttcattgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcaccctt 27045400  T
Q  120 ctaaagacgcaaacatgttgcatggtgctggtacaaaattcactgattcataccctccaaaatctatactattttcatcaacaaaacctaaatgcttcca 219  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27045401 ccaaagacgcaaacatgttgcatggtgctggtacaaaattcactgattcataccctccaaaatctatattattttcatcaacaaaacctaaatgcttcca 27045500  T
Q  220 ctcagtcagaatcgttaccgcaccgctaccgtccatgctaaaatcttgcttatgctccgtcttcggagtgtgatcgatcgagtttttgacataatcagtg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27045501 ctcagtcagaatcgttaccgcaccgctaccgtccatgctaaaatcttgcttatgctccgtctccggagtgtgatcgatcgagtttttgacataatcagtg 27045600  T
Q  320 gaggaagcaatctttttagcctctttgatcaacttaacaatttcat 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27045601 gaggaagcaatctttttagcctctttgatcaacttaacaatttcat 27045646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 27098038 - 27098258
Alignment:
Q  20 ggcatggcagcaacagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcaccctt 119  Q
    ||||||||||||||||||||||  ||||| |||||||| ||||||||||| |||||||||||||  |||| ||||  ||||||||  |||||||    ||    
T  27098038 ggcatggcagcaacagggagtgtagtaaaaatcttaacccctcctttcattgatggatcatcattgtcaaatttattaggagatgtaaaaatgctaattt 27098137  T
Q  120 ctaaagacgcaaacatgttgcatggtgctggtacaaaattcactgattcataccctccaaaatctatactattttcatcaacaaaacctaaatgcttcca 219  Q
    | |  ||||||||||||||||||||||||||||| |||||||||| ||| | ||| ||||||||||    |||| |||||| |||||||||||| |||||    
T  27098138 caattgacgcaaacatgttgcatggtgctggtactaaattcactgcttcgttcccaccaaaatcta---catttccatcaagaaaacctaaatgtttcca 27098234  T
Q  220 ctcagtcagaatcgttaccgcacc 243  Q
    ||| ||||||| |||||| |||||    
T  27098235 ctctgtcagaaccgttactgcacc 27098258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 27105037 - 27105258
Alignment:
Q  20 ggcatggcagcaacagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcaccctt 119  Q
    ||||||||||||||||||||||  ||||| |||||||  ||||||||||| |||||||||||||  |||| ||||  ||||| ||  ||||||| |  ||    
T  27105037 ggcatggcagcaacagggagtgtagtaaaaatcttaatccctcctttcatagatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcattt 27105136  T
Q  120 ctaaagacgcaaacatgttgcatggtgctggtacaaaattcactgattcataccctccaaaatctatactattttcatcaacaaaacctaaatgcttcca 219  Q
    | |  |||||||||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||||    |||| |||||| |||||||||||| |||||    
T  27105137 ccatggacgcaaacaagttgcatggtgctggtactaaattcactgcttcatgcccaccaaaatcta---catttccatcaagaaaacctaaatgtttcca 27105233  T
Q  220 ctcagtcagaatcgttaccgcaccg 244  Q
    ||| ||||||| |||||| ||||||    
T  27105234 ctctgtcagaaccgttactgcaccg 27105258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 27069312 - 27069480
Alignment:
Q  19 aggcatggcagcaacagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcaccct 118  Q
    |||||||||| |||||||||||||||| || ||| |||||||||| | ||| |||||||||| |||||||||||||  |||||| | |||||||||| |     
T  27069312 aggcatggcatcaacagggagtgatgtgaaaatcctaactcctccatccattgatggatcatgatcatcaagtttattaggagacgagaaaatgcacgca 27069411  T
Q  119 tctaaagacgcaaacatgttgcatggtgctggtacaaaattcactgattcataccctccaaaatctata 187  Q
    || |  |  |||| ||| ||||| ||||||||||| ||||||||   |||||| |||||||||||||||    
T  27069412 tcaacggtagcaagcatcttgcacggtgctggtactaaattcacaacttcatagcctccaaaatctata 27069480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 27062245 - 27062411
Alignment:
Q  19 aggcatggcagcaacagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcaccct 118  Q
    |||||| |||||||| |||||||| ||||||||| |||||||||| | ||| |||||||||| |||||||||||||  ||  |||| |||||||||  |     
T  27062245 aggcatagcagcaacggggagtgaagtaaatatcctaactcctccatccattgatggatcatgatcatcaagtttattagctgatgagaaaatgcatgca 27062344  T
Q  119 tctaaagacgcaaacatgttgcatggtgctggtacaaaattcactgattcataccctccaaaatcta 185  Q
    || |  |  |||| ||| ||||||||||| |||| |||||||||| ||||||| |||||||||||||    
T  27062345 tcgacggtggcaagcatcttgcatggtgcaggtagaaaattcactaattcataacctccaaaatcta 27062411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 27040961 - 27041053
Alignment:
Q  19 aggcatggcagcaacagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttaccaggagatgcgaaaat 111  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||| |||||||||||||  |||||||| ||||||    
T  27040961 aggcatagcagcaacagggagtgatgtaaatatcctaactcctccttccattgatagatcatgatcatcaagtttattaggagatgagaaaat 27041053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 27079615 - 27079693
Alignment:
Q  33 cagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttaccaggagatgcgaaaat 111  Q
    |||||||||||||||||||| |||||||||||| ||| ||  |||||| |||||||||||||  |||||||| ||||||    
T  27079615 cagggagtgatgtaaatatcctaactcctccttccattgacagatcatgatcatcaagtttattaggagatgagaaaat 27079693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 27085412 - 27085490
Alignment:
Q  33 cagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttaccaggagatgcgaaaat 111  Q
    |||||||||||||||||||| |||||||||||| ||| ||  |||||| |||||||||||||  |||||||| ||||||    
T  27085412 cagggagtgatgtaaatatcctaactcctccttccattgacagatcatgatcatcaagtttattaggagatgagaaaat 27085490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 27069598 - 27069655
Alignment:
Q  308 acataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcat 365  Q
    ||||||||||||| | ||| ||| ||||||| |||||| |||| ||||||||||||||    
T  27069598 acataatcagtggtgaaagaaatatttttagtctctttaatcagcttaacaatttcat 27069655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 19414049 - 19414124
Alignment:
Q  20 ggcatggcagcaacagggagtgatgtaaatatcttaactcctcctttcatcgatggatcatcatcatcaagtttac 95  Q
    ||||||||| |||||||||||| | | || ||| |  |||||||||||||||||||||| | ||||||||||||||    
T  19414049 ggcatggcatcaacagggagtgttatgaaaatccttgctcctcctttcatcgatggatcttgatcatcaagtttac 19414124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 19414159 - 19414212
Alignment:
Q  130 aaacatgttgcatggtgctggtacaaaattcactgattcataccctccaaaatc 183  Q
    |||||||||||||||||||  ||||||||| |||| |||| | |||||||||||    
T  19414159 aaacatgttgcatggtgctattacaaaattaactgcttcaaatcctccaaaatc 19414212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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