View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8126_low_8 (Length: 260)
Name: NF8126_low_8
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8126_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 238
Target Start/End: Original strand, 6314855 - 6315081
Alignment:
| Q |
12 |
gcagaacctgtgaccgttagggaattaaaagcacacaagtggattgcaaaaagggacagaagtcactctttcccttcctacacacagcacctcctaaggc |
111 |
Q |
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| T |
6314855 |
gcagaacctgtgactgttagggaattaaaagcacacaagtggattgcaaaaagggccagaagtcactctttcccttcctacacacagcacctcctaaggc |
6314954 |
T |
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| Q |
112 |
atatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcag |
211 |
Q |
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| T |
6314955 |
atatcttctttgaatggcaagagactacaacagcttaggggaatagtaacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgcag |
6315054 |
T |
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| Q |
212 |
agtttatttttactgtcatcaacaact |
238 |
Q |
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| T |
6315055 |
aatttatttttactgtcatcaacaact |
6315081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 6318086 - 6318210
Alignment:
| Q |
111 |
catatcttctttgaatggcaagaaactacaacagcttaggggaatagtgacctatgacctcaaattcaaacgcatgcaggggacattttcatcatgtgca |
210 |
Q |
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| T |
6318086 |
catatcttgtttgaatgccaagaggctataaaagtttgggagtatagtgaaatatgaccttaaattcaaacgtatgtaggt--cagtttcatcatgtgga |
6318183 |
T |
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| Q |
211 |
gag--tttatttttactgtcatcaaca |
235 |
Q |
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| T |
6318184 |
gagaatttaattttactgtcatcaaca |
6318210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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