View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8126_low_9 (Length: 240)
Name: NF8126_low_9
Description: NF8126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8126_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40666990 - 40667213
Alignment:
| Q |
1 |
ttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtatcaaaggcccagaattgctta |
100 |
Q |
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| T |
40666990 |
ttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtataaaaggcccagagttgctta |
40667089 |
T |
|
| Q |
101 |
caatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40667090 |
caatgtggtttggtgaaagtgatgccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccat |
40667189 |
T |
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| Q |
201 |
tgccactcaggtttgtttctagtt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
40667190 |
tgccactcaggtttgtttctagtt |
40667213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 40723015 - 40722798
Alignment:
| Q |
1 |
ttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtatcaaaggcccagaattgctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
40723015 |
ttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtataaaaggcctagaattactta |
40722916 |
T |
|
| Q |
101 |
caatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccat |
200 |
Q |
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| T |
40722915 |
caatgtggtttggtgaaagtgaagccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgattccat |
40722816 |
T |
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| Q |
201 |
tgccactcaggtttgttt |
218 |
Q |
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||||||||||||| |||| |
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| T |
40722815 |
tgccactcaggttggttt |
40722798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 27978313 - 27978528
Alignment:
| Q |
1 |
ttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtatcaaaggcccagaattgctta |
100 |
Q |
| |
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|||||||||||||| || ||||| ||||| | || |||||||| ||||| |||||||||||||| |||||||| ||||||||||| || || |||| | |
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| T |
27978313 |
ttctatggtcctcctggttgtggtaaaacccttttggccaaagctattgccaatgaatgtcaagcaaacttcattagtatcaaaggtcccgagctgctca |
27978412 |
T |
|
| Q |
101 |
caatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccat |
200 |
Q |
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||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| | || |||||||||||||| || |||||||| ||||| || || |
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| T |
27978413 |
caatgtggtttggagaaagtgaggctaatgtgagggaaatttttgacaaagctcgtggttctgctccatgtgtccttttctttgatgaacttgattctat |
27978512 |
T |
|
| Q |
201 |
tgccactcaggtttgt |
216 |
Q |
| |
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||| |||||||||||| |
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| T |
27978513 |
tgcaactcaggtttgt |
27978528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 41092021 - 41091809
Alignment:
| Q |
1 |
ttctatggtcctccgggatgtggaaaaactttgttagccaaagcaattgctaatgaatgtcaagctaacttcatcagtatcaaaggcccagaattgctta |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||| | || || ||||| ||||| |||||||| || || ||||| |||||||||||||| || || | || | |
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| T |
41092021 |
ttctatggtcctcctggatgtggtaaaacactattggcaaaagctattgccaatgaatgccaggcaaactttatcagtatcaaaggtcccgagctactca |
41091922 |
T |
|
| Q |
101 |
caatgtggtttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccat |
200 |
Q |
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||||||||||||| ||||||||||| || || |||||||| ||||||||||| | || |||||||||||||| || |||||||| ||||||||||| |
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| T |
41091921 |
caatgtggtttggagaaagtgaggcaaacgtgagggaaatttttgacaaggcccgtggttctgctccatgtgtcctattctttgatgaacttgactccat |
41091822 |
T |
|
| Q |
201 |
tgccactcaggtt |
213 |
Q |
| |
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||| ||||||||| |
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| T |
41091821 |
tgcaactcaggtt |
41091809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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