View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_high_10 (Length: 335)
Name: NF8127_high_10
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 14706495 - 14706795
Alignment:
| Q |
16 |
ccattcaaattttcattcactacaacaccatactcagatagataaataataaatatactttgattaatcaaaagaggaaaaaccctagaaacacaaatag |
115 |
Q |
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| T |
14706495 |
ccattcaaattttcattcactacaacaccatactcagatagataaataataaatatactttgattaatcaaaagaggaaaaaccctagaaacacaaatag |
14706594 |
T |
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| Q |
116 |
caaaagagagggataagggtactgacccttcagtgtaaccactttgcagaagttcaagatatgtatcccatttgtctccaacgacctaattagaaaccaa |
215 |
Q |
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| T |
14706595 |
caaaagagagggataagggtactgacccttcagtgtaaccactttgcagaagttcaagatatgtatcccatttgtctccaacgacctaattagaaaccaa |
14706694 |
T |
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| Q |
216 |
aacgaatttagcaacaattaatcataaaccctaaattttaaaaggcccaaactttataacactatagtatagtatgtgaggtgaagcaaaaagagcaagg |
315 |
Q |
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| T |
14706695 |
aacgaatttagcatcaattaatcataaaccctaaattttaaaaggtccaaactttataacactatagtatagtatgtgaggtgaagcaaaaagggcaagg |
14706794 |
T |
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| Q |
316 |
a |
316 |
Q |
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| T |
14706795 |
a |
14706795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 258
Target Start/End: Original strand, 14716727 - 14716897
Alignment:
| Q |
92 |
gaaaaaccctagaaacacaaatagcaaaagagagggataagggtactgacccttcagtgtaaccactttgcagaagttcaagatatgtatcccatttgtc |
191 |
Q |
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||||||||||||||||| ||||| || ||| || || |||||||| |||||||||||||| || ||| |||| ||||| || | ||||||||||| |
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| T |
14716727 |
gaaaaaccctagaaacagaaatacgaagagaaagcaattagggtactaacccttcagtgtaatcagcttgaagaaagtcaaggtaagaatcccatttgtt |
14716826 |
T |
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| Q |
192 |
tccaacgacctaattaga--aaccaaaacgaatttagcaacaat--taatcataaaccctaaattttaaaa |
258 |
Q |
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| T |
14716827 |
tccaatgacctaattagaagaaacagatcaaatttagcataaattataatcataaaccctaaatttcaaaa |
14716897 |
T |
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