View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_high_11 (Length: 324)
Name: NF8127_high_11
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 16360549 - 16360845
Alignment:
| Q |
1 |
atttggatttgctattgaaggaatggaagatatagggaaaattgatttgaaaaaattaaatgcaagtgatgttatgaagtttcattttccaaatattgca |
100 |
Q |
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| T |
16360549 |
atttggatttgctattgaaggaatggaagatatagggaaaattgattttaaaaaattaaatgcaagtgatgtgatgaagtttcattttccaaatattgca |
16360648 |
T |
|
| Q |
101 |
gtggcttatacattttataattggtatgctcgaatgaatggtttttctgctcgtagaagcaaagtaatgagaaacaaaaacaacgagattatacaacaaa |
200 |
Q |
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| T |
16360649 |
gtggcttatacattttataattggtatgctcgaatgaatggtttttctgctcgtagaagcaaagtaaggagaaacaaaaacaacgagattatacaacaaa |
16360748 |
T |
|
| Q |
201 |
tatttgtttgctacagacaaggttttagagnnnnnnngcttgagaacaataaaatccgtaagcgtgaggcaagagctgacaccaggtgcggatgtga |
297 |
Q |
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| T |
16360749 |
tatttgtttgctacagacaaggttttagagaaaaaaagcttgagaacaataaaatccgtaagcgtgaggcaagagctgacactaggtgcggatgtga |
16360845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 43621054 - 43620752
Alignment:
| Q |
1 |
atttggatttgctattgaaggaatggaagatatagggaaaattgatttgaaaaaattaaatgcaagtgatgttatgaagtttcattttccaaatattgca |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43621054 |
atttggatttgctattcaaggaatggaagatataggaaaaattgattttaaaaaattaaatgcaagtgatgttatgaagtttcattttccaaatattgca |
43620955 |
T |
|
| Q |
101 |
gtggcttatacattttataattggtatgctcgaatgaatggtttttctgctcgtagaagcaaagtaatgagaaacaaaaacaacgagattatacaacaaa |
200 |
Q |
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| T |
43620954 |
gtggcttatgcattttacaattggtatgctcgaatgaatggtttttctgctcgtagaagaaaagtaaggagaaacaaaaacaacgagattatacaacaaa |
43620855 |
T |
|
| Q |
201 |
tatttgtttgctacagacaaggttttagagnnnnnnngcttgagaacaataaaatccgtaagcgtgaggcaagagctgacaccaggtgcggatgtgatgc |
300 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43620854 |
tatttgtttgctacagacaaggtttcagagaaaaaaagcttgagaacaataaaatccgtaagcgtgaggcaagagctgacactaggtgcggatgtgatgc |
43620755 |
T |
|
| Q |
301 |
caa |
303 |
Q |
| |
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||| |
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|
| T |
43620754 |
caa |
43620752 |
T |
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