View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8127_high_12 (Length: 311)

Name: NF8127_high_12
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8127_high_12
NF8127_high_12
[»] chr6 (4 HSPs)
chr6 (13-237)||(32386871-32387095)
chr6 (201-311)||(2386659-2386769)
chr6 (193-240)||(32386102-32386149)
chr6 (199-237)||(29296297-29296335)
[»] chr8 (1 HSPs)
chr8 (175-240)||(5069724-5069789)
[»] chr4 (1 HSPs)
chr4 (167-237)||(25896810-25896884)
[»] chr2 (2 HSPs)
chr2 (168-237)||(1830075-1830144)
chr2 (200-256)||(6993727-6993782)
[»] chr1 (1 HSPs)
chr1 (199-240)||(28689454-28689495)
[»] chr7 (1 HSPs)
chr7 (215-243)||(47134775-47134803)
[»] chr3 (1 HSPs)
chr3 (119-155)||(36507006-36507042)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 32386871 - 32387095
Alignment:
Q  13 tcattatgattcagtaatgtcttcagtttcaactctacatttcaagtatataatttttatcataacttatacaatcatattcagacatgataattccaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32386871 tcattatgattcagtaatgtcttcagtttcaactctacatttcaagtatataatttttatcataacttatacaatcatattcagacatgataattccaaa 32386970  T
Q  113 atgcataggtctgcttggattggcttattggagtttatctactcgcataactatctgtttaggagagctgatagaaaaatcttacaacatgtccatacgt 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32386971 atgcataggtctgtttggattggcttattggagtttatctactcgcataactatctgtttaggagagctgatagaaaaatcttacaacatgtccattcgt 32387070  T
Q  213 aattttcagcttattttcataagct 237  Q
    |||||||||||||||||||||||||    
T  32387071 aattttcagcttattttcataagct 32387095  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 2386659 - 2386769
Alignment:
Q  201 atgtccatacgtaattttcagcttattttcataagctttcaagtactagcttatgataatatcttatgtgaattgtgtttttctcatattagtagctttg 300  Q
    |||||||| |||| ||||||||||| ||||||||||  ||||| ||||||||||||||| ||||||| |||||||||| ||||||| ||||||||| |||    
T  2386659 atgtccattcgtagttttcagcttactttcataagccctcaaggactagcttatgataacatcttatatgaattgtgtgtttctcaaattagtagcattg 2386758  T
Q  301 tcgttgtgtca 311  Q
    |||||||||||    
T  2386759 tcgttgtgtca 2386769  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 32386102 - 32386149
Alignment:
Q  193 cttacaacatgtccatacgtaattttcagcttattttcataagctttc 240  Q
    ||||||||||||||||| ||  ||||||||||| ||||||||||||||    
T  32386102 cttacaacatgtccataagttgttttcagcttactttcataagctttc 32386149  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 29296297 - 29296335
Alignment:
Q  199 acatgtccatacgtaattttcagcttattttcataagct 237  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  29296297 acatgtccataagttattttcagcttattttcataagct 29296335  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 5069789 - 5069724
Alignment:
Q  175 gagagctgatagaaaaatcttacaacatgtccatacgtaattttcagcttattttcataagctttc 240  Q
    ||||||| || |||| |||||| ||||||| |||| || |||||||||||||||||||||||||||    
T  5069789 gagagcttatggaaacatcttataacatgttcataagtcattttcagcttattttcataagctttc 5069724  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 25896884 - 25896810
Alignment:
Q  167 ctgtttaggagagctgatagaaaaatcttacaacatgtccatacgtaa----ttttcagcttattttcataagct 237  Q
    ||||||||||||||| ||||||| | ||||  |||||||||||| |||    |||||||||||||||| ||||||    
T  25896884 ctgtttaggagagcttatagaaatagcttatgacatgtccatacataaactgttttcagcttattttcctaagct 25896810  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 1830144 - 1830075
Alignment:
Q  168 tgtttaggagagctgatagaaaaatcttacaacatgtccatacgtaattttcagcttattttcataagct 237  Q
    ||||| |||||||| || |||| ||||||  ||||||||||| | | |||||||||||||| ||||||||    
T  1830144 tgtttgggagagcttatggaaacatcttatgacatgtccatagggagttttcagcttatttccataagct 1830075  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 6993727 - 6993782
Alignment:
Q  200 catgtccatacgtaattttcagcttattttcataagctttcaagtactagcttatga 256  Q
    |||||||||| || ||||| |||||||||||||||||| ||||| | ||||||||||    
T  6993727 catgtccataagtcatttttagcttattttcataagctctcaagca-tagcttatga 6993782  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 28689454 - 28689495
Alignment:
Q  199 acatgtccatacgtaattttcagcttattttcataagctttc 240  Q
    ||||||||||| ||  ||||||||||||||||||||||||||    
T  28689454 acatgtccataagttgttttcagcttattttcataagctttc 28689495  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 47134775 - 47134803
Alignment:
Q  215 ttttcagcttattttcataagctttcaag 243  Q
    |||||||||||||||||||||||||||||    
T  47134775 ttttcagcttattttcataagctttcaag 47134803  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 36507006 - 36507042
Alignment:
Q  119 aggtctgcttggattggcttattggagtttatctact 155  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  36507006 aggtctgtttggattggcttatttgagtttatctact 36507042  T

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