View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_high_15 (Length: 294)
Name: NF8127_high_15
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 4419422 - 4419687
Alignment:
| Q |
18 |
actcacttcgccgctttagtt-cagactcgttctttctcaggttcgaatcttcatcaatttttcgaattttattttacctaattgaaaatcaatgaattc |
116 |
Q |
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| T |
4419422 |
actcacttcgccgctttagtttcagactcgttttttctcaggttcgaatcttcatcaatttttcgaattttattttacctaattgaaaatcaatgaattc |
4419521 |
T |
|
| Q |
117 |
aaattgatttcacttcattttcaattaatttctgtattctggaaccaattttccatttagtttatttttattcatattgttgtgattgttgttgtttgat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4419522 |
aaattgatttcacttcattttcaattaatttctgtattctggaaccaattttccatttagtttatttttattcatattgttgtgattgttgttgtttgat |
4419621 |
T |
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| Q |
217 |
gaatcttcccttaaagatgagtcctttccttctcctcgctgacatctattttcttcgttcttctca |
282 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4419622 |
gaatcttcccataaagatgagtcctttccttctcctcgttgacatctattttcttcgttcttctca |
4419687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 12014748 - 12014679
Alignment:
| Q |
73 |
aatttttcgaattttattttacc-taattgaaaatcaatgaattcaaattgatttcacttcattttcaat |
141 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||| |
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| T |
12014748 |
aattattcgaattttattttaccctaattgaaaatcaatgaattcaaattcatttcatttcgttttcaat |
12014679 |
T |
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