View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_high_16 (Length: 280)
Name: NF8127_high_16
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 3828953 - 3828703
Alignment:
| Q |
18 |
tttttcgttattttcctcaaagttttcttcaccaatgactaaacttaagcacatgcaatgcgtataaggaatgacagaaaaagtataaaagaccaaaagt |
117 |
Q |
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| T |
3828953 |
tttttcgttattttcctcaaagttttcttcaccaatgactaaacttaagcacatgcaatgcgtataag-aatgacagaaaaagtataaaagaccaaaagt |
3828855 |
T |
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| Q |
118 |
gctacataaaaacaaaccacaaatattcttattgtacactttaaacgatcaacaaaaagtggcagcaatgatttgattcattgttaattacttaattttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3828854 |
gctacataaaaacaaaccacaaatattcttattgtacactttaaacgatcaacaaaaagtggcagtaatgatttgattcattgttaattacttaattttc |
3828755 |
T |
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| Q |
218 |
attccttaagtttctttttctgttcaaacgtagattattacttaatgatgtc |
269 |
Q |
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| T |
3828754 |
attccttaagtttctttttctgttcaaacgtagattattacttaatgatgtc |
3828703 |
T |
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