View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_high_27 (Length: 240)
Name: NF8127_high_27
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3951940 - 3951725
Alignment:
| Q |
1 |
taatattaacagtggaatagaatagtacctacccaacattctctcagacaccttaggattgtggatagttaaaacttccttgagcaacagtccaatccat |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3951940 |
taatattaacggtggaatagaatagtacctacccaacattctctcagacaccttaggattgtggatagttaaaactttcttgagcaacagtccaatccat |
3951841 |
T |
|
| Q |
101 |
aacgtgattttattctactgatagattctgtatcaaaagaccatgtaggtatagtggaatttcctatgctaaataatgcttccttgtgttgtgtggtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951840 |
aacgtgattttattctactgatagattctgtatcaaaagaccatgtaggtgtagtggaatttcctatgctaaataatgcttccttgtgttgtgtggtcca |
3951741 |
T |
|
| Q |
201 |
attcccaggtgtgact |
216 |
Q |
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|||||||||||||||| |
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| T |
3951740 |
attcccaggtgtgact |
3951725 |
T |
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