View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8127_high_3 (Length: 561)
Name: NF8127_high_3
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_high_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 551
Target Start/End: Complemental strand, 8947212 - 8946681
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8947212 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
8947113 |
T |
|
| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8947112 |
gattgactcaggtgtttggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaat |
8947013 |
T |
|
| Q |
220 |
accaacaattcatcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtga |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8947012 |
agcaacaattcatcattttgcaacaagaaactcattggagcaagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtga |
8946913 |
T |
|
| Q |
320 |
acactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaac |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8946912 |
acactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaac |
8946813 |
T |
|
| Q |
420 |
ggcaaggggaatagctacattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccgattgcaatttcatctgatataatggctgca |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
8946812 |
ggcaaggggaatagctacattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccaattgcaatttcatctgatataatggctgca |
8946713 |
T |
|
| Q |
520 |
attgatgccgcaatatcggacggtgttgatgt |
551 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
8946712 |
attgatgctgcaatatcggacggtgttgatgt |
8946681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 551
Target Start/End: Original strand, 8973283 - 8973808
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | | ||| ||||||||||| ||||| | |
|
|
| T |
8973283 |
tgaagcttgacacaactcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtat |
8973382 |
T |
|
| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| || ||||||| ||| || |||| |||||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
8973383 |
gattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaat |
8973482 |
T |
|
| Q |
220 |
accaacaattcatcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtga |
319 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | || ||| || | || | | || ||||| ||| |
|
|
| T |
8973483 |
accaacaattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttga |
8973582 |
T |
|
| Q |
320 |
acactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaac |
419 |
Q |
| |
|
|| | ||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
8973583 |
actccacacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattctttggttatgcaaacggaac |
8973682 |
T |
|
| Q |
420 |
ggcaaggggaatagctacattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccgattgcaatttcatctgatataatggctgca |
519 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||| || |||||| || ||| | | |||| | |||||||||||||| || ||| |
|
|
| T |
8973683 |
agcaagaggaatagctacattgtctagagtagctatgtacaagactgcgtggggcaaagatggaca------tgcagtgtcatctgatataatagccgca |
8973776 |
T |
|
| Q |
520 |
attgatgccgcaatatcggacggtgttgatgt |
551 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
8973777 |
gttgatgcctcaatatcggacggtgttgatgt |
8973808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 8961881 - 8962295
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
| |
|
|||| ||| |||||||| ||||||| ||||||||||| || ||||| | |||||| |||| ||||||| | | ||| ||||||||||| ||||| | |
|
|
| T |
8961881 |
tgaagcttgacacaacatactcacctcaattccttggtcttaatccctacaaaggggtgtggctagcttctgattatggaaaagatgtcattgttggtgt |
8961980 |
T |
|
| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
8961981 |
gattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtcaatttgaaaat |
8962080 |
T |
|
| Q |
220 |
accaacaattcatcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaatacaacaatagtga |
319 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| | |||| ||||| | |||| ||||||||| ||||| |
|
|
| T |
8962081 |
accaacaattcatctttttgcaacaaaaaactcattggagcaagattcttcaacaaagggttcttggcgatgaattccaccattgatacaacaacagtga |
8962180 |
T |
|
| Q |
320 |
acactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgcaaatggaac |
419 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||| | ||| || ||||| ||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8962181 |
actctacacgtgacacagatggtcatggaacccacacttcaacaacggtagcggggaatcaggttaatggtgcatcattcttcggttatgcaaatggaac |
8962280 |
T |
|
| Q |
420 |
ggcaaggggaatagc |
434 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
8962281 |
agcaagaggaatagc |
8962295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 465
Target Start/End: Complemental strand, 9950244 - 9950079
Alignment:
| Q |
300 |
cattaatacaacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttc |
399 |
Q |
| |
|
||||||||||||||| ||||| |||||| || | ||| ||| | | | |||||||||||| |||| || | ||||||||||||||||||||| |||| |
|
|
| T |
9950244 |
cattaatacaacaattgtgaatactacatgtcatacatatgattaagagacccacacttcattaacaacaacttgaaatcaagttgatggtgcatttttc |
9950145 |
T |
|
| Q |
400 |
tttggttatgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtacaagatt |
465 |
Q |
| |
|
|||||||||| |||| |||| ||| | |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
9950144 |
tttggttatgtaaatcgaactacaaaagaaataattacattgtctagagtagctatgtacaagatt |
9950079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 8962351 - 8962409
Alignment:
| Q |
493 |
gcaatttcatctgatataatggctgcaattgatgccgcaatatcggacggtgttgatgt |
551 |
Q |
| |
|
||| |||||||||| | ||| ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
8962351 |
gcactttcatctgacacaatagctgcaattgatgccgcaatatcagacggtgtggatgt |
8962409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 8957087 - 8957140
Alignment:
| Q |
225 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaataaagg |
278 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || | ||||||||| ||||| |
|
|
| T |
8957087 |
caattcatctctttgcaacaagaaactcattggtgccaaattcttcaacaaagg |
8957140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 411
Target Start/End: Original strand, 8957197 - 8957270
Alignment:
| Q |
338 |
atggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggttatgca |
411 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| ||||| |||||||| ||| || || |||||||||||| |
|
|
| T |
8957197 |
atggtcatgggactcacacttcatcaacagcagctggaaacagagttgatgatgcttcattttttggttatgca |
8957270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 551
Target Start/End: Original strand, 8957346 - 8957398
Alignment:
| Q |
499 |
tcatctgatataatggctgcaattgatgccgcaatatcggacggtgttgatgt |
551 |
Q |
| |
|
||||||||| |||| || |||||||| || |||||||| |||||||||||||| |
|
|
| T |
8957346 |
tcatctgatgtaatagccgcaattgacgcggcaatatcagacggtgttgatgt |
8957398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 548
Target Start/End: Complemental strand, 21688363 - 21687829
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| |||||||| ||||||| | ||||||||||||| ||||| | |||||| ||||| ||||| ||||| | |
|
|
| T |
21688363 |
tgaagcttgacacaacacactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgt |
21688264 |
T |
|
| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
| |
|
|| ||| | ||||||||||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | ||||||||||||| ||| |
|
|
| T |
21688263 |
aatagacactggtgtttggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttgagaat |
21688164 |
T |
|
| Q |
220 |
accaaca------------attcatcattttgcaacaagaaactcattggagctagattcttcaataaagggttatctgcgaaaaattcgaacattaata |
307 |
Q |
| |
|
|||||| ||| ||| || |||||||||||||||||||||||||| |||||||| ||||| || | || ||| | || ||||||| || |
|
|
| T |
21688163 |
tccaacatccagtcaatcaatttatctttgtgcaacaagaaactcattggagctaggttcttcaacaaaggcttcttggcaaaacactccaacattagta |
21688064 |
T |
|
| Q |
308 |
caacaatagtgaacactacacgtgacacaaatggtcatggaacccacacttcaacaacagcagccggaaatcaagttgatggtgcatctttctttggtta |
407 |
Q |
| |
|
||||||| ||||| | |||||||||||||| ||||| || || || ||||||||||||||||| |||| ||||||||||||||||||||||||| || |
|
|
| T |
21688063 |
caacaattttgaactccacacgtgacacaaacggtcacgggacacatacttcaacaacagcagctggaagcaaagttgatggtgcatctttctttggcta |
21687964 |
T |
|
| Q |
408 |
tgcaaatggaacggcaaggggaatagctacattgtctagagtgtctatgtacaagattgtgtggggacaaaatgaagatccgattgcaatttcatctgat |
507 |
Q |
| |
|
|||||||||||| ||||| || |||||| ||| ||||||||| |||| ||||||| || ||||||| || ||| ||| ||| ||||||||||| |
|
|
| T |
21687963 |
tgcaaatggaacagcaagaggtatagcttcatcgtctagagtagctatatacaagactgcgtggggaaaagatggaga------cgcactttcatctgat |
21687870 |
T |
|
| Q |
508 |
ataatggctgcaattgatgccgcaatatcggacggtgttga |
548 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21687869 |
ataatagctgcaattgatgctgcaatatctgacggtgttga |
21687829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 34963947 - 34963779
Alignment:
| Q |
29 |
acacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactc |
128 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| ||| || |||| | ||| ||||| ||| |||| | ||| | ||| |||||||| | |
|
|
| T |
34963947 |
acacaacacattcacctcaattccttggcctcaatcccaacataggcgcttggcatgattcgaagttcggtgaagacataattgtaggtgtgattgacac |
34963848 |
T |
|
| Q |
129 |
aggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
197 |
Q |
| |
|
||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
34963847 |
aggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 34963754 - 34963707
Alignment:
| Q |
225 |
caattcatcattttgcaacaagaaactcattggagctagattcttcaa |
272 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34963754 |
caattcatctctttgcaacaagaaactcattggagctaaattcttcaa |
34963707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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