View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_high_4 (Length: 523)
Name: NF8127_high_4
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 35012976 - 35013466
Alignment:
| Q |
19 |
acttcgtctcaatttccatgtgatgttaatgcaaattaatgaagcaatgtgattctcaacgctaagtccttgtccaaaata-cttatagctgtctgcaat |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
35012976 |
acttggtctcaatttccatgtgatgttaatgcaaattaaagaagcaatgtgattctcaacgctaagtccttgtccagaataacttatagctgtctgcaat |
35013075 |
T |
|
| Q |
118 |
gcatatcacgtccaaatagaaagaattcatccccacacatgcatatatttggacgtgacgtctatttttggttcaagtnnnnnnnttaactcattattat |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35013076 |
gcatatcacgtccaaatagaaagaattcatccctacacatgcatatatttggacgtgacgtctatttttggttcaagtaaaaaaattaactcattattat |
35013175 |
T |
|
| Q |
218 |
taacaaaatttagagtacaatgattcnnnnnnntaaataatttagagtacaattggatgaaaaatgaaggttattaattattacaaggaacacgtgtgat |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35013176 |
taacaaaatttagagtacaatgattcaaaaaaataaataatttagagtacaattggatgaaaaatgaaggttattaattattacaaggaacacgtgtgat |
35013275 |
T |
|
| Q |
318 |
agacacattttctatggcatgagtgttaccattaacttgtcgtctaaaatattgttgtagccaaataaaatggttctacaatcttctaacataatcttat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
35013276 |
agacacattttctatggcatgagtgttaccattaacttgtcgtctaaaaaattgttgtagccaaataaaatggttctccaatcttctaatataatcttat |
35013375 |
T |
|
| Q |
418 |
tcggttctattaatattgacaattagcatatcacctgcaacttattttcaatttagtttaaatatgacgtctaaaatgcactattggaata |
508 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |
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| T |
35013376 |
tcagttctattaatattgacaattagcatatcacctgcaacttattttcaatttagtttaaatatgacgtctaaaaagccctattgcaata |
35013466 |
T |
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