View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_high_5 (Length: 490)
Name: NF8127_high_5
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Original strand, 14944921 - 14945398
Alignment:
| Q |
15 |
atcaacctccgtcgaataagtactcaagatcttctttcgatacaacaagtacactccttttcggggattcgaagagatgagaccaatagggtgattcatc |
114 |
Q |
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| T |
14944921 |
atcaacctccgtcgaataagtactcaagatcttctttcgatacaacgagtacactccttttcggggattcgaagagatgagaccaatagggtgattcatc |
14945020 |
T |
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| Q |
115 |
aattggtcaaggaatgctcgtgcttgaaatttgaacaagtggagctaagttctatgcttcataa--tgatgtacaacaacttgatgaggatgatatctgg |
212 |
Q |
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| T |
14945021 |
aattggtcaaggaatgctcgtgcttgaaatttgaacaagtggagctaagttttatgcttcataacatgatgtacaacaacttgatgaggatgatatctgg |
14945120 |
T |
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| Q |
213 |
aaagagatactatggggaagagattgacgcgaaggatgcgaaagaagcgaaggaatttagggagacggtcgaggagatggtgaaattaacaggggtttca |
312 |
Q |
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| T |
14945121 |
aaagagatactatggggaagagattgacgcgaaggatgcgaaagaagcgaaggaatttagggagacggttgaggagatggtgaaattaacaggggtttca |
14945220 |
T |
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| Q |
313 |
aacaaggcagattacttgccatttttaaggtggtttgattttcagaatttagagaagaggttacaaaatataagcaatagatttgatgctatcttgaatg |
412 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14945221 |
aacaaggcagattacttgccctttttaaggtggtttgattttcagaatttagagaagaggttacaaaatataagcaatagatttgatgctatcttgaatg |
14945320 |
T |
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| Q |
413 |
cactcatttatgagaaccgtagtaagatgaagacacataatacctttatagatcgtctcttaaaacttcaagaatcac |
490 |
Q |
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|||||||||||||||||||||||||||||||| || | |||||||| ||||||| ||||||||||||||||||||||| |
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| T |
14945321 |
cactcatttatgagaaccgtagtaagatgaagccagagaataccttgatagatcatctcttaaaacttcaagaatcac |
14945398 |
T |
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