View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_low_1 (Length: 864)
Name: NF8127_low_1
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 768; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 17 - 847
Target Start/End: Complemental strand, 2829873 - 2829043
Alignment:
| Q |
17 |
tcagggatagtaacggacgcaaccaactttctgatggatctaaaaccatcccaatcaacnnnnnnnttgcttccagtcctcatcattcaaaagaaatggc |
116 |
Q |
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| T |
2829873 |
tcagggatagtaacggacgcaaccaactttctgatggatctaaaaccatcccaatcaacaaaaaaattgcttccagtcctcatcattcaaaagaaatggc |
2829774 |
T |
|
| Q |
117 |
aagtctgagagagaaaataaaaatgcttgaggtaactattccagcatcaatgatatgaagacataggttgnnnnnnnnnnaagaaaatttattgctccct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2829773 |
aagtctgagagagaaaataaaaatgcttgaggtaactattctagcatcaatgatatgaagacataggttgttttttttttaagaaaatttattgctccct |
2829674 |
T |
|
| Q |
217 |
ggatgctgttttctcttgtaatatttcagaacatatactatatatccttcattttctccttcttatgttaatataaaagattgtttatgtcagggcctga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829673 |
ggatgctgttttctcttgtaatatttcagaacatatactatatatccttcattttctccttcttatgttaatataaaagattgtttatgtcagggcctga |
2829574 |
T |
|
| Q |
317 |
taaagtcaaaggaaactgccttggaaacttcaacaacttcatctatgaagaaggaaaaggaacttcagagcagaattgtggagctggagaacaaagtgga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829573 |
taaagtcaaaggaaactgccttggaaacttcaacaacttcatctatgaagaaggaaaaggaacttcagagcagaattgtggagctggagaacaaagtgga |
2829474 |
T |
|
| Q |
417 |
ggaatttaatcagaatgttactttacacgaggtaaactaacgctataactatttgcaaaagcatttttgttccacgaaacctgaattagaaactttgtct |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2829473 |
ggaatttaatcagaatgttactttacacgaggtaaactaacgctataactatttgcaaaagcatttttgttccacaaaacctgaattagaaactttgtct |
2829374 |
T |
|
| Q |
517 |
tgcttagttcaaactttcattgttgaaatgtggattgataatgaagcaattgaattacatatcttcaataaattgacattaacatgcccttcaaattggt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829373 |
tgcttagttcaaactttcattgttgaaatgtggattgataatgaagcaattgaattacatatcttcaataaattgacattaacatgcccttcaaattggt |
2829274 |
T |
|
| Q |
617 |
tgttcaggatagaagtattaaaagttcaaatgagatatcggaaaaagtaagaaatagattggaacacgcggacaacagtcttagtggcgtattgaccgaa |
716 |
Q |
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| T |
2829273 |
tgttcaggatagaagtattaaaagttcaaatgagatatcggaaaaagtaagaaatagattggaacacgcggacaacagtcttagtggcgtattgaccgaa |
2829174 |
T |
|
| Q |
717 |
ttatcgtcattgaaggaaagaaacaaatcaatggaaagcgagctcaaagagatgcaagagagatactcagaaatgagtctcaaatttgctgaggtagaag |
816 |
Q |
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| T |
2829173 |
ttgtcgtcattgaaggaaagaaacaaatcaatggaaagcgagctcaaagagatgcaagagagatactcagaaatgagtctcaaatttgctgaggtagaag |
2829074 |
T |
|
| Q |
817 |
gtgaaagacaaattcttgttatgactgtaag |
847 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
2829073 |
gtgaaagacaaattcttgttatgactgtaag |
2829043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 734 - 847
Target Start/End: Original strand, 40801433 - 40801546
Alignment:
| Q |
734 |
aagaaacaaatcaatggaaagcgagctcaaagagatgcaagagagatactcagaaatgagtctcaaatttgctgaggtagaaggtgaaagacaaattctt |
833 |
Q |
| |
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|||| ||||||||||||||| || || |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
40801433 |
aagagacaaatcaatggaaactgaactgaaagagttgcaagaaagatactcagaaatgagtctcaaatttgcagaggtagaaggtgaaagacaaaagctt |
40801532 |
T |
|
| Q |
834 |
gttatgactgtaag |
847 |
Q |
| |
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| T |
40801533 |
gttatgactgtaag |
40801546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 40800658 - 40800725
Alignment:
| Q |
84 |
tgcttccagtcctcatcattcaaaagaaatggcaagtctgagagagaaaataaaaatgcttgaggtaa |
151 |
Q |
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|||||| | ||||||| | || ||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
40800658 |
tgcttcaattcctcataactccaaagaaatgacagatctgagagagaaaataaaaatgcttgaggtaa |
40800725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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