View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_low_15 (Length: 298)
Name: NF8127_low_15
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 29144059 - 29144338
Alignment:
| Q |
19 |
atactattaaatcactgttccaaacttgtttacactttattacatttaaattttctcaaatttgatatatagctttggcaaaatttaaacctttttatct |
118 |
Q |
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| T |
29144059 |
atactattaaatcactgttccaaacttttttacactttattacatttaaattttctcaaatttgatatatagctttggcaaaatttaaacctttttatct |
29144158 |
T |
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| Q |
119 |
actttaagttgaaacaaacacactaatgcaagtttccacttcactgtcaagtttcaacaccttatgtttctactatacccttaaatacctcactcaatta |
218 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29144159 |
actctaagttgaaacaaacacactaatgcaagtttccacttcactgtcaagtttcaacaccttatgtttctactatacccttaaatacctccctcaatta |
29144258 |
T |
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| Q |
219 |
ttatttttctaattttcatgtccaaaacaaccaaacacatttataagcaatcagtgtcaacctatgaagcacagacactc |
298 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||| ||||||| |
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| T |
29144259 |
ttatttttctaattttcacgtccaaaacaaccaaacacatttataaccaatcggtgttgacctatgaagcacggacactc |
29144338 |
T |
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