View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_low_19 (Length: 276)
Name: NF8127_low_19
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 35013457 - 35013707
Alignment:
| Q |
19 |
tattgcaataatctattgtagcacatgaagtagaccataattctttgtttgtgagtttggatttgaaagggagaggagagatgttgacttannnnnnnnn |
118 |
Q |
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| T |
35013457 |
tattgcaataatctattgtagcacatggagtagatcataatactttgtttgtgagtttggatttgaaagggagaggagagatgttgacttattttttatt |
35013556 |
T |
|
| Q |
119 |
nnnnnnnnnnaaaattaaatacactactagaaacactctattttaaacatcctctctaatattcacttttttattgaacaagatcaatgtaaagtttaca |
218 |
Q |
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| T |
35013557 |
tttattttttaaaattaaatacactactaaaaacactctattttaaacatcctctctaatattcacttttttattgagcaagatcaatgtaaagtttaca |
35013656 |
T |
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| Q |
219 |
cattaaaaatataactaacgtaaaatagtaaaatcgatattcatctcactc |
269 |
Q |
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| T |
35013657 |
cattaaaaatataactcacgtaaaatggtaaaatcgacattgatttcactc |
35013707 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 2009166 - 2009121
Alignment:
| Q |
150 |
aacactctattttaaacatcctctctaatattcacttttttattga |
195 |
Q |
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|||| ||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
2009166 |
aacattctcttttaaacatcctctctaatattcatttttttattga |
2009121 |
T |
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