View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_low_20 (Length: 275)
Name: NF8127_low_20
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 8947212 - 8946980
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
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| T |
8947212 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
8947113 |
T |
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| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8947112 |
gattgactcaggtgtttggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaat |
8947013 |
T |
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| Q |
220 |
accaacaattcatcattttgcaacacgaaactc |
252 |
Q |
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| T |
8947012 |
agcaacaattcatcattttgcaacaagaaactc |
8946980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 8973283 - 8973515
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
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| T |
8973283 |
tgaagcttgacacaactcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtat |
8973382 |
T |
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| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
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| T |
8973383 |
gattgataccggtgtttggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaat |
8973482 |
T |
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| Q |
220 |
accaacaattcatcattttgcaacacgaaactc |
252 |
Q |
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| T |
8973483 |
accaacaattcatctttttgcaacaagaaactc |
8973515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 8961881 - 8962105
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
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|||| ||| |||||||| ||||||| ||||||||||| || ||||| | |||||| |||| ||||||| | | ||| ||||||||||| ||||| | |
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| T |
8961881 |
tgaagcttgacacaacatactcacctcaattccttggtcttaatccctacaaaggggtgtggctagcttctgattatggaaaagatgtcattgttggtgt |
8961980 |
T |
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| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaat |
219 |
Q |
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| T |
8961981 |
gattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtcaatttgaaaat |
8962080 |
T |
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| Q |
220 |
accaacaattcatcattttgcaaca |
244 |
Q |
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|||||||||||||| |||||||||| |
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| T |
8962081 |
accaacaattcatctttttgcaaca |
8962105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 21688363 - 21688169
Alignment:
| Q |
20 |
tgaaacttcacacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggttt |
119 |
Q |
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|||| ||| |||||||||||||||| ||||| |||||||| ||||||| | ||||||||||||| ||||| | |||||| ||||| ||||| ||||| | |
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| T |
21688363 |
tgaagcttgacacaacacactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgt |
21688264 |
T |
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| Q |
120 |
gattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttg |
214 |
Q |
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| T |
21688263 |
aatagacactggtgtttggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttg |
21688169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 34963947 - 34963779
Alignment:
| Q |
29 |
acacaacacactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactc |
128 |
Q |
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|||||||||| ||||| |||||||||||||||||||| ||| || |||| | ||| ||||| ||| |||| | ||| | ||| |||||||| | |
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| T |
34963947 |
acacaacacattcacctcaattccttggcctcaatcccaacataggcgcttggcatgattcgaagttcggtgaagacataattgtaggtgtgattgacac |
34963848 |
T |
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| Q |
129 |
aggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
197 |
Q |
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||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
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| T |
34963847 |
aggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
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