View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_low_23 (Length: 261)
Name: NF8127_low_23
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 27798489 - 27798274
Alignment:
| Q |
2 |
tggttaacattttcctttaaataattattttatgaataatattttgtccacccgcaaatttatctctctcacaataaaatttggttgagcatcaaacaaa |
101 |
Q |
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| T |
27798489 |
tggttaacatttccctttaaattattattttatgaataatattttgtccaccc-caaatttatctctctctcaataaaatttggttgagcatcaaacaaa |
27798391 |
T |
|
| Q |
102 |
tattacagatagataggcattacagttggtcattagaatttagcttctcttatcattgtgtctaagcagatatatgatgatacagtcctcaacattccaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27798390 |
tattacagatagataggcattacagttggtcattagaatttagcttctcttctcattgtgtttaagcagatatatgatgatacagtcctcaacattccaa |
27798291 |
T |
|
| Q |
202 |
agcaaatgcaatagaag |
218 |
Q |
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||||||||||||||||| |
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| T |
27798290 |
agcaaatgcaatagaag |
27798274 |
T |
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