View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_low_24 (Length: 259)
Name: NF8127_low_24
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_24 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 20386685 - 20386938
Alignment:
| Q |
3 |
cagctgaagaaggacctttttgataaaatgcaaatatctttccaaccacatcctgaaaatcaccaaaaacaaaactctaaactcatacaatacatatann |
102 |
Q |
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| T |
20386685 |
cagctgaagaaggaccattttgataaaatgcaaatatctttccaaccacatcctgaaaatcaccaaaaacaaaactctaaactcatacaatacatatatt |
20386784 |
T |
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| Q |
103 |
nnnnngagaaatatttcaaaaaatcgaacgatacatcaaactgacaaggcttgcgattcnnnnnnnnnnggtcaaatgacctacgattctttaaaccgct |
202 |
Q |
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| T |
20386785 |
tttttgag-aatatttc-aaaaatcgaaccatacatcaaactgacaaggcttgcgattcttttttttttggtcaagtgacctacgattctttaaaccgct |
20386882 |
T |
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| Q |
203 |
taaacctggnnnnnnnnntattggtggaccgctcaaataaatgaaccacatacaatg |
259 |
Q |
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| T |
20386883 |
taaacctgg-aaaaaaaatattggtggaccgctcaaataaatgaaccgcatacaatg |
20386938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 20374130 - 20374198
Alignment:
| Q |
3 |
cagctgaagaaggacctttttgataaaatgcaaatatctttccaaccacatcctgaaaatcaccaaaaa |
71 |
Q |
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| T |
20374130 |
cagctgaagaaggacctttttgataaaatgcaaatatctttccaacgacatcctgaaaatcaccaaaaa |
20374198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 20366805 - 20366873
Alignment:
| Q |
3 |
cagctgaagaaggacctttttgataaaatgcaaatatctttccaaccacatcctgaaaatcaccaaaaa |
71 |
Q |
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| T |
20366805 |
cagctgtagaaggacctttttgataaaatgcaaatatctttccaacgatatcctgaaaatcaccaaaaa |
20366873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 20345468 - 20345520
Alignment:
| Q |
28 |
aaatgcaaatatctttccaaccacatcctgaaaatcaccaaaaacaaaactct |
80 |
Q |
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| T |
20345468 |
aaatgcaaataactttctaaccacatcctgaaaatcaccaaaaacaacactct |
20345520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 18201932 - 18202005
Alignment:
| Q |
27 |
aaaatgcaaatatctttccaaccacatcctgaaaatcaccaaaaacaaaactctaaactcatacaatacatata |
100 |
Q |
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| T |
18201932 |
aaaatgctgatatcttttcaaccacattctgaaaatcaccaaaaacaaaactctgaattcataccatacatata |
18202005 |
T |
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