View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_low_25 (Length: 254)
Name: NF8127_low_25
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 25789293 - 25789073
Alignment:
| Q |
3 |
ttatatttatgttcaagtttatcaaatttgatatatgtggcaactagcaagttgtacatgtgcttaattgatggcannnnnnnnnnnnnattaaggatca |
102 |
Q |
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| T |
25789293 |
ttatgtttatgttcaagtttatcaaatttgagatatgtggcaactagcaagttgtat-tgtgcttaattgatggtatttttttta----atta-ggatca |
25789200 |
T |
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| Q |
103 |
ttggagcagttttatagttgaagatgatttcaagttcatagcaaggaatggattaaatgcagttagaattccagtgggttggtggatagcaagtgaccca |
202 |
Q |
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| T |
25789199 |
ttggagcagttttatagttgaagatgatttcaagttcatagctaggaatggattaaatgcagttagaattccagttggttggtggatagctagtgaccca |
25789100 |
T |
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| Q |
203 |
actccaccatggccttatgttggaggt |
229 |
Q |
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| T |
25789099 |
actccaccatggccttatgttggaggt |
25789073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 25814761 - 25814624
Alignment:
| Q |
92 |
attaaggatcattggagcagttttatagttgaagatgatttcaagttcatagcaaggaatggattaaatgcagttagaattccagtgggttggtggatag |
191 |
Q |
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| T |
25814761 |
attaaggatcattggagcagttttatagttgaagatgatttcaagttcatagcaaggaatggattaaatgcagttagaattccagtgggttggtggatag |
25814662 |
T |
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| Q |
192 |
caagtgacccaactccaccatggccttatgttggaggt |
229 |
Q |
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| T |
25814661 |
caagtgacccaactccaccatggccttatgttggaggt |
25814624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 25758571 - 25758788
Alignment:
| Q |
3 |
ttatatttatgttcaagtttatcaaatttgatatatgtggcaactagcaagttgtacatgtgcttaattgatggcannnnnnnnnnnnn---attaagga |
99 |
Q |
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| T |
25758571 |
ttatgtttatgttcaagtttatcaaatttgagatatgtggcaactagcaagttgtat-tgtgcttaattgatgatatttatttattctttttattaagga |
25758669 |
T |
|
| Q |
100 |
tcattggagcagttttatagttgaagatgatttcaagttcatagcaaggaatggattaaatgcagttagaattccagtgggttggtggatagcaagtgac |
199 |
Q |
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| T |
25758670 |
tcattggagcagttttatagttgaagatgatttcaagttcatagctaggaatggattaaatgcagttagaattccagttggttggtggatagctagtgac |
25758769 |
T |
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| Q |
200 |
ccaactccaccatggcctt |
218 |
Q |
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| T |
25758770 |
ccaactccaccatggcctt |
25758788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 25863763 - 25863630
Alignment:
| Q |
96 |
aggatcattggagcagttttatagttgaagatgatttcaagttcatagcaaggaatggattaaatgcagttagaattccagtgggttggtggatagcaag |
195 |
Q |
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| T |
25863763 |
aggaacattggagcacttttatagttgaagatgatttcaaattcatagctaggaatggattaaatgcagttagaattccagtgggttggtggatagcaag |
25863664 |
T |
|
| Q |
196 |
tgacccaactccaccatggccttatgttggaggt |
229 |
Q |
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||| ||||||||||||||||||||||| |||||| |
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| T |
25863663 |
tgatccaactccaccatggccttatgtgggaggt |
25863630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25814858 - 25814785
Alignment:
| Q |
1 |
tcttatatttatgttcaagtttatcaaatttgatatatgtggcaactagcaagttgtacatgtgcttaattgatg |
75 |
Q |
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|||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||| |
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| T |
25814858 |
tcttatgtttatgttcaagtttatcaaatgtgagatatgtggcaactaccaagttgta-ttgtgcttaattgatg |
25814785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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