View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8127_low_35 (Length: 201)
Name: NF8127_low_35
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 16360532 - 16360351
Alignment:
| Q |
1 |
tttctatatctccaaactccataaactgatgcaaacaaaatatatacatacactatattacaaagggctctacaaattctaaatgccataaattagccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16360532 |
tttctatatctccaaactccataaactgatgcaaacaaaatatatacatacactatattacaaatggctctacaaattctaaatgccataaattagccaa |
16360433 |
T |
|
| Q |
101 |
aaatagaatataaaattacaaagaacggcatgatacctgtgaggtattttcactgctactcagaatctattcatcgttactg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16360432 |
aaatagaatataaaattacaaagaacggcatgatacctgtgaggtattttcactgctactcagaatttgttcatcgttactg |
16360351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 43621071 - 43621252
Alignment:
| Q |
1 |
tttctatatctccaaactccataaactgatgcaaacaaaatatatacatacactatattacaaagggctctacaaattctaaatgccataaattagccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43621071 |
tttctatatctccaaactccataaactgatgcaaacaaaatatatacatacactatattacaaagggctctacaaattctaaatgccataaattagccaa |
43621170 |
T |
|
| Q |
101 |
aaatagaatataaaattacaaagaacggcatgatacctgtgaggtattttcactgctactcagaatctattcatcgttactg |
182 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
43621171 |
aaatagaatataaaattacaaagaaaggcatgatacctgtgaggtattttcactgctactcataatctgttcattgttactg |
43621252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University