View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8127_low_5 (Length: 514)
Name: NF8127_low_5
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8127_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 280 - 495
Target Start/End: Complemental strand, 32592857 - 32592643
Alignment:
| Q |
280 |
tagcatcataatgataaaggcagctattatattcaatccattcatctagtggacaaactgacggaagaaactaatatcatttccattttgaataacaata |
379 |
Q |
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| T |
32592857 |
tagcatcataatgataaaggcagctattatattcaatccattcatctagtggacaaactgacggaagaaactaatatcatttccattttgaataacaata |
32592758 |
T |
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| Q |
380 |
ttaatttctttcttctacttgttctcttacaccttcaatgcatgttggccgatatcagaaatcatcaaattgcttgcatggttcttatatataccactat |
479 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32592757 |
ttaatttc-ttcttctacttgttctcttacaccttgaatgcatgttggccgatatcagaaatcatcaaattgcttgcatggttcttatatataccactct |
32592659 |
T |
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| Q |
480 |
aaggttatgcaatatt |
495 |
Q |
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|||||||||||||||| |
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| T |
32592658 |
aaggttatgcaatatt |
32592643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 32593127 - 32592998
Alignment:
| Q |
27 |
ttctaataaactaaactatcccattaaaattgacattgtagagaatcaaacttaaaactttgagaacaaattatacactttcaaggactgaaatcatcat |
126 |
Q |
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| T |
32593127 |
ttctaataaactaaactatcccattgaaattgacattgtagagaatcgaacttaaaactttgagaacaa---atacactttcaaggactgaa---atcat |
32593034 |
T |
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| Q |
127 |
catcatcaaaccaacccaaatggcttgctaataagt |
162 |
Q |
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| T |
32593033 |
catcatcaaacaaacccaaatggcttgggaataagt |
32592998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 32602963 - 32602878
Alignment:
| Q |
300 |
cagctattatattcaatccattcatctagtggacaaactgacggaagaaactaatatcatttccattttgaataacaatattaatt |
385 |
Q |
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| T |
32602963 |
cagctattatattcaattcattcatctagtggacaaactgacggaagaacaaaatatcatttccattttgaataacaatattaatt |
32602878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 32592967 - 32592907
Alignment:
| Q |
170 |
tgtcactctttacatgacataaaaagtatatatacgttactgaagattctattgttttgcc |
230 |
Q |
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| T |
32592967 |
tgtcactctttacatgacataaaaagtatatatacgttaatgaagattctattgttttgcc |
32592907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 495
Target Start/End: Complemental strand, 32602878 - 32602798
Alignment:
| Q |
418 |
tgcatgttggccgatatcagaaatcatcaaattgcttgcatggt---tcttatatataccactataaggttatgcaatatt |
495 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
32602878 |
tgcatgttggccaatgtcagaaatcatcaaattgcttgcatggttggtcttatatataccactataaagttatgcaatatt |
32602798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 32603085 - 32603046
Alignment:
| Q |
170 |
tgtcactctttacatgacataaaaagtatatatacgttac |
209 |
Q |
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||||||||||||||| |||||||||||||||||| ||||| |
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| T |
32603085 |
tgtcactctttacatcacataaaaagtatatatatgttac |
32603046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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