View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8127_low_8 (Length: 414)

Name: NF8127_low_8
Description: NF8127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8127_low_8
NF8127_low_8
[»] chr3 (12 HSPs)
chr3 (1-226)||(29703533-29703758)
chr3 (1-226)||(36950155-36950380)
chr3 (1-226)||(53282148-53282373)
chr3 (27-228)||(20104175-20104375)
chr3 (9-226)||(39833236-39833452)
chr3 (11-229)||(5232798-5233015)
chr3 (138-226)||(29833271-29833359)
chr3 (137-226)||(12938397-12938486)
chr3 (141-226)||(33216791-33216876)
chr3 (9-72)||(31658825-31658888)
chr3 (9-80)||(50650397-50650468)
chr3 (9-80)||(12938542-12938613)
[»] chr5 (12 HSPs)
chr5 (1-226)||(39884550-39884775)
chr5 (9-227)||(24788329-24788546)
chr5 (137-228)||(1828406-1828497)
chr5 (137-227)||(40313872-40313962)
chr5 (137-227)||(41413575-41413665)
chr5 (138-226)||(31482202-31482290)
chr5 (9-80)||(1828553-1828624)
chr5 (9-80)||(40314018-40314089)
chr5 (9-80)||(41413448-41413519)
chr5 (9-80)||(30625005-30625076)
chr5 (13-80)||(31482078-31482145)
chr5 (137-226)||(30624860-30624949)
[»] chr4 (11 HSPs)
chr4 (1-226)||(15531208-15531433)
chr4 (9-226)||(20133265-20133481)
chr4 (9-226)||(47031464-47031669)
chr4 (9-226)||(55919392-55919608)
chr4 (9-228)||(45989615-45989822)
chr4 (9-226)||(42069051-42069256)
chr4 (137-226)||(24228276-24228365)
chr4 (9-82)||(28679506-28679579)
chr4 (9-80)||(4919155-4919226)
chr4 (9-80)||(27293087-27293158)
chr4 (9-72)||(42976479-42976542)
[»] chr8 (8 HSPs)
chr8 (1-226)||(3879464-3879689)
chr8 (238-398)||(15066245-15066406)
chr8 (238-398)||(15076198-15076359)
chr8 (238-398)||(15052040-15052201)
chr8 (9-227)||(531538-531755)
chr8 (288-398)||(15215037-15215147)
chr8 (9-191)||(30945458-30945637)
chr8 (138-226)||(13802813-13802901)
[»] chr2 (12 HSPs)
chr2 (1-226)||(7089079-7089304)
chr2 (1-221)||(33755067-33755287)
chr2 (11-226)||(37078802-37079016)
chr2 (9-226)||(17690459-17690675)
chr2 (9-211)||(15330604-15330806)
chr2 (9-211)||(16429734-16429935)
chr2 (9-226)||(14810120-14810335)
chr2 (9-184)||(37261702-37261876)
chr2 (13-80)||(18977120-18977187)
chr2 (140-226)||(18977221-18977307)
chr2 (137-228)||(14096250-14096341)
chr2 (9-80)||(14096397-14096468)
[»] chr1 (8 HSPs)
chr1 (9-229)||(12981373-12981592)
chr1 (9-226)||(45348273-45348489)
chr1 (9-73)||(45325640-45325704)
chr1 (9-80)||(27286305-27286376)
chr1 (137-225)||(39241555-39241644)
chr1 (9-80)||(52385819-52385890)
chr1 (190-232)||(15752414-15752456)
chr1 (157-226)||(45325768-45325837)
[»] chr7 (8 HSPs)
chr7 (9-228)||(45972276-45972494)
chr7 (9-226)||(29243235-29243449)
chr7 (11-227)||(47327796-47328011)
chr7 (9-226)||(34093973-34094178)
chr7 (9-226)||(6442492-6442697)
chr7 (136-179)||(29258430-29258473)
chr7 (9-80)||(19436813-19436884)
chr7 (9-80)||(29833950-29834021)
[»] scaffold0166 (1 HSPs)
scaffold0166 (9-227)||(30712-30929)
[»] chr6 (4 HSPs)
chr6 (136-194)||(33694809-33694867)
chr6 (27-80)||(28138063-28138116)
chr6 (9-80)||(12938783-12938854)
chr6 (9-80)||(33694921-33694992)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 29703533 - 29703758
Alignment:
Q  1 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29703533 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 29703632  T
Q  101 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatt 200  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  29703633 actgtaaaccgcctgcactataacataatgcagggtatccgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatt 29703732  T
Q  201 tttctgacttctccgtagaagctccc 226  Q
    ||||||||||||||||||||||||||    
T  29703733 tttctgacttctccgtagaagctccc 29703758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 36950155 - 36950380
Alignment:
Q  1 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 100  Q
    |||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36950155 ttgatactaatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaagttttccttctacttacggt 36950254  T
Q  101 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatt 200  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||    
T  36950255 actgtagaacgcctgcactctaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtcgtt 36950354  T
Q  201 tttctgacttctccgtagaagctccc 226  Q
    |||||||||||| | |||||||||||    
T  36950355 tttctgacttcttcatagaagctccc 36950380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 53282373 - 53282148
Alignment:
Q  1 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||    
T  53282373 ttgatactaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaagttttccttttacttacggt 53282274  T
Q  101 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatt 200  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||||    
T  53282273 actgtagaccgcctgcacaataacataatgcagggtatctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtcatt 53282174  T
Q  201 tttctgacttctccgtagaagctccc 226  Q
    |||||||||||| | |||||||||||    
T  53282173 tttctgacttcttcatagaagctccc 53282148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 20104375 - 20104175
Alignment:
Q  27 taccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaaccgc-ctgcactgtaaca 125  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||  || |||| |||||| |||| ||||| || ||||||||||    
T  20104375 taccacaataacataaagatcaagtaaatctaaccattaagatcatgaaataaagtttttctt-tactaacggtattgtagaccgcactacactgtaaca 20104277  T
Q  126 taatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctcc 225  Q
    | ||  ||| | |||||||||||||||||| |||||| ||||| | |||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||    
T  20104276 ttatt-aggatttctgacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtcattttcctgacttcttcgtagaagctcc 20104178  T
Q  226 cat 228  Q
    |||    
T  20104177 cat 20104175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 39833236 - 39833452
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||| |    
T  39833236 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttc-acttacgctaccgtaga 39833334  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  39833335 ccgcactacactgaaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 39833433  T
Q  208 cttctccgtagaagctccc 226  Q
    ||||  | |||||||||||    
T  39833434 cttcatcatagaagctccc 39833452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 5233015 - 5232798
Alignment:
Q  11 tcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaacc 110  Q
    |||||||||||   | ||||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||||  ||| |||||||||| |||| |||    
T  5233015 tcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttcttc-acttacggtattgtagacc 5232917  T
Q  111 gc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgact 209  Q
    || || ||||||||||| ||  | | | |||||||||||||||||| |||||| ||||| ||||||| |||||||||||||| || ||||||| ||||||    
T  5232916 gcactacactgtaacattat-taagatctctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgact 5232818  T
Q  210 tctccgtagaagctcccata 229  Q
    ||| |||||||||| |||||    
T  5232817 tcttcgtagaagcttccata 5232798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 29833359 - 29833271
Alignment:
Q  138 tctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||||||| || || ||||||| ||||||||| |||||||||||||    
T  29833359 tctgacgtgtcatcacttaaaatctgattggttcattcaaacgacttcaccaaagaagtcattttactgacttcttcgtagaagctccc 29833271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 12938486 - 12938397
Alignment:
Q  137 atctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||||||||| || ||||||  | ||||||  | |||||||||||    
T  12938486 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 12938397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 33216791 - 33216876
Alignment:
Q  141 gacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    ||||||||||||||| |||||| |||||  ||||||||||||||||||||| || |||||||  |||||||  |||||||||||||    
T  33216791 gacgtgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaagaagtcattttaatgacttcatcgtagaagctccc 33216876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 31658825 - 31658888
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcat 72  Q
    |||||||||||||  || |||||||||||||||||||| |||||||||||||| ||||||||||    
T  31658825 aatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcat 31658888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 50650397 - 50650468
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||||||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  50650397 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 50650468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 12938613 - 12938542
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    ||||||||||| |  || ||||||||||||||||| || ||||||| |||||| |||||||| |||||||||    
T  12938613 aatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 12938542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39884775 - 39884550
Alignment:
Q  1 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 100  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39884775 ttgatactaattatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 39884676  T
Q  101 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatt 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  39884675 actgtaaaccgcctgcactgtaacataatgcatggtatctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatt 39884576  T
Q  201 tttctgacttctccgtagaagctccc 226  Q
    |||||||||||||||||||| |||||    
T  39884575 tttctgacttctccgtagaaactccc 39884550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 24788329 - 24788546
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||| |||||||| |||| ||| ||||||| ||| ||| |    
T  24788329 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaagctttccttc-acttacgctaccgtaga 24788427  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  24788428 ccgcactacactggaacatgatt-agggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 24788526  T
Q  208 cttctccgtagaagctccca 227  Q
    ||||  | ||||||||||||    
T  24788527 cttcatcatagaagctccca 24788546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 1828497 - 1828406
Alignment:
Q  137 atctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctcccat 228  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||||||||| || ||||||  | ||||||  | |||||||||||||    
T  1828497 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctcccat 1828406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 40313962 - 40313872
Alignment:
Q  137 atctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccca 227  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||||||||| || ||||||  | ||||||  | ||||||||||||    
T  40313962 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccca 40313872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 41413575 - 41413665
Alignment:
Q  137 atctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccca 227  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||||||||| || ||||||  | ||||||  | ||||||||||||    
T  41413575 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccca 41413665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 31482202 - 31482290
Alignment:
Q  138 tctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    ||||| |||||||||||| |||| | |||||  |||||||||||||| |||||| || ||||||| ||||||||| |||||||||||||    
T  31482202 tctgaagtgtcatcacttaaaatttgattggctcattcaaacgactttaccgaagaagtcattttactgacttcttcgtagaagctccc 31482290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 1828624 - 1828553
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    ||||||||||| |  || ||||||||||||||||| || ||||||| |||||| |||||||| |||||||||    
T  1828624 aatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 1828553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 40314089 - 40314018
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    ||||||||||| |  || ||||||||||||||||| || ||||||| |||||| |||||||| |||||||||    
T  40314089 aatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 40314018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 41413448 - 41413519
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    ||||||||||| |  || ||||||||||||||||| || ||||||| |||||| |||||||| |||||||||    
T  41413448 aatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 41413519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 30625076 - 30625005
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||||||  || |||||||||||||||||||| ||  |||||||||| |||| ||  |||||||||    
T  30625076 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaaattttgaaataaa 30625005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 31482078 - 31482145
Alignment:
Q  13 atgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||  || ||||| |||| ||||||||| ||  |||||||||||||||||||||||| ||||    
T  31482078 atgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcatgaagtaaa 31482145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 30624949 - 30624860
Alignment:
Q  137 atctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    |||||||||||||| ||||||||||| ||||||  | | ||||||||||||  ||||| ||| |||   ||||||| | |||||||||||    
T  30624949 atctgacgtgtcatgacttgaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttctcgacttcttcatagaagctccc 30624860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 15531208 - 15531433
Alignment:
Q  1 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15531208 ttgataataatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 15531307  T
Q  101 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||| |||||    
T  15531308 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtatcatcacttgaaatctgattggttcattcaaacgacttcactgaaaaagtcatt 15531407  T
Q  201 tttctgacttctccgtagaagctccc 226  Q
    ||||||||||||||||||||||||||    
T  15531408 tttctgacttctccgtagaagctccc 15531433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 20133481 - 20133265
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||| |    
T  20133481 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttc-acttacgctaccgtaga 20133383  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  20133382 ccgcactacactgaaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 20133284  T
Q  208 cttctccgtagaagctccc 226  Q
    ||||  | |||||||||||    
T  20133283 cttcatcatagaagctccc 20133265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 47031464 - 47031669
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  ||||||||||||||||||||||  || |||||||||||||||||||||||           || ||||||||||||||||||| |    
T  47031464 aatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatcatg-----------tccttctacttacggtactgtaga 47031552  T
Q  109 ccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgac 208  Q
    |||||| ||||||||||||||||||  | ||||||||||||    || |||||| ||||| |||||||||||||| ||||||| || ||||||| |||||    
T  47031553 ccgcctacactgtaacataatgcagttt-tctgacgtgtcaatggttaaaatctgattggcccattcaaacgactgcaccgaagaagtcattttcctgac 47031651  T
Q  209 ttctccgtagaagctccc 226  Q
    |||| |||||||||||||    
T  47031652 ttcttcgtagaagctccc 47031669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 55919392 - 55919608
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||| ||| |    
T  55919392 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaataaagttttccttc-acttacgctaccgtaga 55919490  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||| ||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  55919491 ccgcactacactggaacatgat-tagggtttttgatgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 55919589  T
Q  208 cttctccgtagaagctccc 226  Q
    ||||  | |||||||||||    
T  55919590 cttcatcatagaagctccc 55919608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 45989615 - 45989822
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  ||||||||||||||||||||||| || ||||||||||| |||||||||||           || ||||||||||||||||||| |    
T  45989615 aatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg-----------tccttctacttacggtactgtaga 45989703  T
Q  109 ccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgac 208  Q
    |||||| ||||||||||| ||||| | | ||||||||||      || |||||| ||||| |||||||||||||| |||| || || ||||||| |||||    
T  45989704 ccgcctacactgtaacatgatgca-gttttctgacgtgtataggattaaaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgac 45989802  T
Q  209 ttctccgtagaagctcccat 228  Q
    |||| |||||||||||||||    
T  45989803 ttcttcgtagaagctcccat 45989822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 42069051 - 42069256
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  ||||||||||||||||||||||  || ||||||||||| |||||||||||           || ||||||||||||||||||| |    
T  42069051 aatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatcatg-----------tccttctacttacggtactgtaga 42069139  T
Q  109 ccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgac 208  Q
    |||||| ||||||||||| ||||| | | |||||||||||     || |||||| ||||  |||||||||||||| ||||||| || ||||||| |||||    
T  42069140 ccgcctacactgtaacatgatgca-gttttctgacgtgtctaggattaaaatctgattgacccattcaaacgactgcaccgaagaagtcattttcctgac 42069238  T
Q  209 ttctccgtagaagctccc 226  Q
    |||| | |||||||||||    
T  42069239 ttcttcatagaagctccc 42069256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 24228276 - 24228365
Alignment:
Q  137 atctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||||||||| || ||||||  | ||||||  | |||||||||||    
T  24228276 atctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 24228365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 28679579 - 28679506
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagt 82  Q
    |||||||||||||  ||||||||||||||||||||||  |||||||| |||| ||||||||||| |||||||||    
T  28679579 aatcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaaataaagt 28679506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 4919226 - 4919155
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||||||  || |||||||||| ||||||||| ||  ||||||||||||||||||| |||||||||    
T  4919226 aatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaataaa 4919155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 27293158 - 27293087
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||||||  || |||||||||||||||||||| ||  |||||||||| |||||||| |||||||||    
T  27293158 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 27293087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 42976542 - 42976479
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcat 72  Q
    |||||||||||||  || ||||||| |||||||||||| |||||||||||||| ||||||||||    
T  42976542 aatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcat 42976479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3879464 - 3879689
Alignment:
Q  1 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 100  Q
    |||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| ||    
T  3879464 ttgatactaatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaagtttttcttctacttacagt 3879563  T
Q  101 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatt 200  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| || ||    
T  3879564 actgtagaccgcctgcacactaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtcgtt 3879663  T
Q  201 tttctgacttctccgtagaagctccc 226  Q
    |||||||||||| |||||||||||||    
T  3879664 tttctgacttcttcgtagaagctccc 3879689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 238 - 398
Target Start/End: Original strand, 15066245 - 15066406
Alignment:
Q  238 aatagctggttattaacacaattttcaagctaacgaaaattgcaactag-gttgtgttctccttcaatggcttcaacagatatcacacatatgaaagaag 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  15066245 aatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaag 15066344  T
Q  337 accaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15066345 accaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataat 15066406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 238 - 398
Target Start/End: Original strand, 15076198 - 15076359
Alignment:
Q  238 aatagctggttattaacacaattttcaagctaacgaaaattgcaactag-gttgtgttctccttcaatggcttcaacagatatcacacatatgaaagaag 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  15076198 aatagctggttattaacacaattttcaagctaacgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaag 15076297  T
Q  337 accaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15076298 accaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataat 15076359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 238 - 398
Target Start/End: Original strand, 15052040 - 15052201
Alignment:
Q  238 aatagctggttattaacacaattttcaagctaacgaaaattgcaactag-gttgtgttctccttcaatggcttcaacagatatcacacatatgaaagaag 336  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  15052040 aatagctggttattaacacaattttcaagataacgaaaattgcaactagtgttgtgttctccttcaatggcttcaacagatctcaaacatatgaaagaag 15052139  T
Q  337 accaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatccatgattataat 398  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15052140 accaatcaagggatggacaagaaaaaattagcgaagaaaacaaggtaatccatgattataat 15052201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 531755 - 531538
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| || |||||||||||||||| ||| ||||||| ||| ||| |    
T  531755 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaataaagttttccttc-acttacgctaccgtaga 531657  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  531656 ccgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 531558  T
Q  208 cttctccgtagaagctccca 227  Q
    ||||  | ||||||||||||    
T  531557 cttcatcatagaagctccca 531538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 15215147 - 15215037
Alignment:
Q  288 ttgtgttctccttcaatggcttcaacagatatcacacatatgaaagaagaccaatcaagggatggacaagaaacaattagcgaagaaaacaaggtaatcc 387  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||    
T  15215147 ttgtgttctccttcaatggcttcaacagatctcacaaatatgaaagaagaccaatcaagggatggacaagaaacaactagcaaagtaaacaaggtaagcc 15215048  T
Q  388 atgattataat 398  Q
    |||||||||||    
T  15215047 atgattataat 15215037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 30945458 - 30945637
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |    
T  30945458 aatcatgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaagttttcattc-acttacgctaccgtaga 30945554  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaa 191  Q
    |||| || ||||| ||||| ||  ||||| ||||||||||||||| || |||||| ||||  ||||||||||||||||||||||    
T  30945555 ccgcactacactggaacatgat-tagggtttctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaa 30945637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 13802813 - 13802901
Alignment:
Q  138 tctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    |||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||| ||||||| ||||||||| |||||||||||||    
T  13802813 tctgacgtgtcatcacttaaaatctgattggttcattcaaacgactttaccgaaaaagtcattttactgacttcttcgtagaagctccc 13802901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7089304 - 7089079
Alignment:
Q  1 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 100  Q
    |||||| |||||||||||| ||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7089304 ttgatactaatcatgtgtaaacaatataccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttctacttacggt 7089205  T
Q  101 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatt 200  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||    
T  7089204 actgtagaccgcctgcactctaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcatcgaaaaagtcgtt 7089105  T
Q  201 tttctgacttctccgtagaagctccc 226  Q
    |||||||||||| | |||||||||||    
T  7089104 tttctgacttcttcatagaagctccc 7089079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33755067 - 33755287
Alignment:
Q  1 ttgatattaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggt 100  Q
    |||||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  33755067 ttgatactaatcatgtgtagacaatataccacaataacatatagaccaagtaaatctaaccattaatatcatgaaataaagtttttcttctacttacggt 33755166  T
Q  101 actgtaaaccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatt 200  Q
    ||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| || ||    
T  33755167 actctagaccgcctgcactctaacataatgcagggtatctgacgtgtcatcacttgaaatctaattgacccattcaaacgacttcaccgaaaaagtcgtt 33755266  T
Q  201 tttctgacttctccgtagaag 221  Q
    |||||||||||| | ||||||    
T  33755267 tttctgacttcttcatagaag 33755287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 37079016 - 37078802
Alignment:
Q  11 tcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaacc 110  Q
    |||||||||||   | ||||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||||  ||| |||||||||| |||| |||    
T  37079016 tcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttcttc-acttacggtattgtagacc 37078918  T
Q  111 gc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgact 209  Q
    || || ||||||||||| ||  | | | |||||||||||||||||| |||||| ||||| ||||||| |||||||||||||| || ||||||| ||||||    
T  37078917 gcactacactgtaacattat-taagatttctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgact 37078819  T
Q  210 tctccgtagaagctccc 226  Q
    ||| |||||||||||||    
T  37078818 tcttcgtagaagctccc 37078802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 17690675 - 17690459
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| ||| ||| |    
T  17690675 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaagttttccttc-acttacgctaccgtaga 17690577  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  17690576 ccgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 17690478  T
Q  208 cttctccgtagaagctccc 226  Q
     |||  | |||||||||||    
T  17690477 gttcatcatagaagctccc 17690459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 15330806 - 15330604
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||| |    
T  15330806 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttc-acttacgctaccgtaga 15330708  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaat-ctaattggtccattcaaacgacttcaccgaaaaaatcatttttctg 206  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||| || ||||| |||||||||||||||||||||| || ||||||| |||    
T  15330707 ccgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatactgattggcccattcaaacgacttcaccgaagaagtcattttcctg 15330609  T
Q  207 acttc 211  Q
    |||||    
T  15330608 acttc 15330604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 16429935 - 16429734
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || ||||| |||||||||||||  ||||||||||||||||||| |||||||||||||||||||  || ||||||| ||| ||| |    
T  16429935 aatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccctc-acttacgctaccgtaga 16429837  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    || | || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| | |||||||||||||||||||| || ||||||| ||||    
T  16429836 ccacactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcctattcaaacgacttcaccgaagaagtcattttcctga 16429738  T
Q  208 cttc 211  Q
    ||||    
T  16429737 cttc 16429734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 14810120 - 14810335
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  || |||||||||||||||| ||||||||||||||||||| ||| ||||||| |||  || |    
T  14810120 aatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaataaagttttccttc-acttacgctaccataga 14810218  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| ||||||||||||| ||||| || || ||||||| ||||    
T  14810219 ccgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgac-tcaccaaagaagtcattttcctga 14810316  T
Q  208 cttctccgtagaagctccc 226  Q
    ||||  | |||||||||||    
T  14810317 cttcatcatagaagctccc 14810335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 37261702 - 37261876
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||| |    
T  37261702 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttc-acttacgctaccgtaga 37261800  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgactt 184  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| | |||||||||||||    
T  37261801 ccgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcctattcaaacgactt 37261876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 18977120 - 18977187
Alignment:
Q  13 atgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||  || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  18977120 atgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaaataaa 18977187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 18977221 - 18977307
Alignment:
Q  140 tgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    |||||||||||||||| |||||| |||||   | | ||||||||||| |||| || ||||||| ||||||||| | |||||||||||    
T  18977221 tgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtcattttcctgacttcttcatagaagctccc 18977307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 14096341 - 14096250
Alignment:
Q  137 atctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctcccat 228  Q
    ||||||||||||||  |||||||||| |||||   | | ||||||||||||||||||| ||| ||  | ||||||| | |||||||||||||    
T  14096341 atctgacgtgtcatgtcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattccccgacttcttcatagaagctcccat 14096250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 14096468 - 14096397
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||||||  || |||||||||| ||||||||| ||  |||||||||  |||||||| |||||||||    
T  14096468 aatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaagatcttgaaataaa 14096397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 12981592 - 12981373
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||| |    
T  12981592 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttc-acttacgctaccgtaga 12981494  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  12981493 ccgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 12981395  T
Q  208 cttctccgtagaagctcccata 229  Q
    ||||  | ||||||||||||||    
T  12981394 cttcatcatagaagctcccata 12981373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 45348273 - 45348489
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||| |    
T  45348273 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttc-acttacgctaccgtaga 45348371  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||  | |||||||||||||||||||| |||||||||| ||||    
T  45348372 ccgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgacctattcaaacgacttcaccgaagaaatcattttcctga 45348470  T
Q  208 cttctccgtagaagctccc 226  Q
    ||||  | |||||||||||    
T  45348471 cttcatcatagaagctccc 45348489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 45325640 - 45325704
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatg 73  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  45325640 aatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatcatg 45325704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 27286376 - 27286305
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||||||  || |||||||||||||||||||| ||  |||||||||| |||||||  |||||||||    
T  27286376 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaa 27286305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 39241644 - 39241555
Alignment:
Q  137 atctgacgtgtcatcacttgaaatctaattggtcc-attcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctcc 225  Q
    ||||||||||| ||||||| |||||| ||||  || ||||||||||||||| |||| || ||||||| || |||||| | ||||||||||    
T  39241644 atctgacgtgttatcacttaaaatctgattgaccccattcaaacgacttcatcgaagaagtcattttcctaacttcttcatagaagctcc 39241555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 52385819 - 52385890
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||||||  || |||||||||||||||||||  ||  |||||||||| | |||||| |||||||||    
T  52385819 aatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaataaa 52385890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 15752414 - 15752456
Alignment:
Q  190 aaaaaatcatttttctgacttctccgtagaagctcccataaat 232  Q
    ||||||||| |||||||||| | ||||||||||||||||||||    
T  15752414 aaaaaatcaattttctgactgcaccgtagaagctcccataaat 15752456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 45325768 - 45325837
Alignment:
Q  157 aaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgacttctccgtagaagctccc 226  Q
    |||||| ||||| |||||||||||||| ||| ||| || ||||||| |||||||||  ||| ||||||||    
T  45325768 aaatctgattggcccattcaaacgactgcactgaagaagtcattttcctgacttctttgtataagctccc 45325837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 9e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 45972494 - 45972276
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||| |    
T  45972494 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagttttccttc-acttacgctaccgtaga 45972396  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||  ||||| ||  ||||| | ||||||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  45972395 ccgcactacactagaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 45972297  T
Q  208 cttctccgtagaagctcccat 228  Q
    ||||  | |||||||||||||    
T  45972296 cttcatcatagaagctcccat 45972276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 29243449 - 29243235
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||  ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |    
T  29243449 aatcatgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaagttttcattc-acttacgctaccgtaga 29243353  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| ||||||||||||||| || |||||| ||||  |||||||||||||||||||||| || ||||||| ||||    
T  29243352 ccgcactacactggaacatgatt-agggtttctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagtcattttcctga 29243254  T
Q  208 cttctccgtagaagctccc 226  Q
    ||||  | |||||||||||    
T  29243253 cttcatcatagaagctccc 29243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 47328011 - 47327796
Alignment:
Q  11 tcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaacc 110  Q
    |||||||||||   | ||||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||||  ||| |||||| ||| |||| ||     
T  47328011 tcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttcttc-acttacagtattgtagact 47327913  T
Q  111 gc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgact 209  Q
    || || ||||||||||| ||  | | | |||||||||||||| ||| |||||| ||||| ||||||| |||||||||||||| || ||||||| ||||||    
T  47327912 gcactacactgtaacattat-taagatttctgacgtgtcatcgcttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgact 47327814  T
Q  210 tctccgtagaagctccca 227  Q
    ||| ||||||||||||||    
T  47327813 tcttcgtagaagctccca 47327796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 34094178 - 34093973
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  ||||||||||||||||||||||  || ||||||||||| ||||||| |||           || ||||||||||||||||||| |    
T  34094178 aatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagattatg-----------tccttctacttacggtactgtaga 34094090  T
Q  109 ccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgac 208  Q
    |||||| ||||||||||| ||||||  | |||||||||||     || |||||| ||||| |||||||||||||| ||||||| || |||||||||||||    
T  34094089 ccgcctacactgtaacatgatgcagttt-tctgacgtgtctaggattaaaatctgattggcccattcaaacgactgcaccgaagaagtcatttttctgac 34093991  T
Q  209 ttctccgtagaagctccc 226  Q
    |||| |||||||||||||    
T  34093990 ttcttcgtagaagctccc 34093973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 6442697 - 6442492
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  ||||||||||||||||||||||| || ||||||||||  |||||||||||           || ||||||||||||||||||| |    
T  6442697 aatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatcatg-----------tccttctacttacggtactgtaga 6442609  T
Q  109 ccgcctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctgac 208  Q
    |||||| ||||||||||| ||||| | | ||||||||||      || |||||| ||||| |||||||||||||| |||| || || ||||||| |||||    
T  6442608 ccgcctacactgtaacatgatgca-gttttctgacgtgtataggattaaaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgac 6442510  T
Q  209 ttctccgtagaagctccc 226  Q
    |||| |||||||||||||    
T  6442509 ttcttcgtagaagctccc 6442492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 29258473 - 29258430
Alignment:
Q  136 tatctgacgtgtcatcacttgaaatctaattggtccattcaaac 179  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  29258473 tatctgacgtgtcatcacttgaaatctgattggcccattcaaac 29258430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 19436884 - 19436813
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    ||||||||||| |  || |||||||||||||||||||| ||  |||||||||  |||||||| |||||||||    
T  19436884 aatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaa 19436813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 29833950 - 29834021
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    ||||||||| |||  || |||||||||||||||||||| ||  |||||||||  |||||||| |||||||||    
T  29833950 aatcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaa 29834021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 9 - 227
Target Start/End: Original strand, 30712 - 30929
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaa 108  Q
    |||||||||||||  || |||||||||||||||||||  ||||||||||||||||||| ||||| |||||||| |||| ||| ||||||| ||| ||| |    
T  30712 aatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaagctttccttc-acttacgctaccgtaga 30810  T
Q  109 ccgc-ctgcactgtaacataatgcagggtatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaaatcatttttctga 207  Q
    |||| || ||||| ||||| ||  ||||| | ||||||||||||| || |||||| ||||| |||||||||||||||||||||| || ||||||| ||||    
T  30811 ccgcactacactggaacatgatt-agggtttttgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctga 30909  T
Q  208 cttctccgtagaagctccca 227  Q
    ||||  | ||||||||||||    
T  30910 cttcatcatagaagctccca 30929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 33694867 - 33694809
Alignment:
Q  136 tatctgacgtgtcatcacttgaaatctaattggtccattcaaacgacttcaccgaaaaa 194  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  33694867 tatctaacgtgtcatcacttaaaatctgattggtccattcaaacgacttcaccgaaaaa 33694809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 28138063 - 28138116
Alignment:
Q  27 taccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  28138063 taccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaa 28138116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 12938854 - 12938783
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||||||||||  || |||||||||||||||||||| ||  |||||||||| |||||||  |||||||||    
T  12938854 aatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaa 12938783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 33694992 - 33694921
Alignment:
Q  9 aatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaa 80  Q
    |||||| ||||||  || ||||||||||| |||||| | || ||||||||||  ||||||||||||||||||    
T  33694992 aatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatgaaataaa 33694921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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