View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8128_high_2 (Length: 511)
Name: NF8128_high_2
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 41090726 - 41091212
Alignment:
| Q |
1 |
gttgtagaactcatctgtttca-agtccccaagtgctacaaaatcttcatcaaatggtggcgttcaccttcaccggtggtagtggcacctcagccagtca |
99 |
Q |
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|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41090726 |
gttgtagaactcatctgtttcatagtccctaattgctacaaaatcttcatcaaatggtggcgttcaccttcaccggtggtagtggcaccgcagccagtca |
41090825 |
T |
|
| Q |
100 |
atgaggtccagatgggtccagtttgaagccgagnnnnnnnnnnnnnnnnncaccatccaggtagctactttcacttgtatctgttgtttcatatgttgtt |
199 |
Q |
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| T |
41090826 |
atgaggtccagatgggtccagtttgaagccgaggaagaagaagaaga---caccatccaggtagctactttcacttgtatctgttgtttcatatgttgtt |
41090922 |
T |
|
| Q |
200 |
gattctattttatcaatattatcaactcagtacttatttgcatccaataaaatcatttttaggaactaatctaaaagtgtgatttgattagatgtatgct |
299 |
Q |
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| T |
41090923 |
gattctattttatcaatattatcaactcagtacttatttgcatccaataaaatcatttttaggaactaatctaaaagtgtgatttgattagatgtatgct |
41091022 |
T |
|
| Q |
300 |
ttnnnnnnntttacaccatcagtttatataaattaaaaccttaaaatatcattaagatttaaatatttgttagagtatttttaggatttgttagnnnnnn |
399 |
Q |
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| T |
41091023 |
ttaaaaagttttacaccatcagtttatataaattaaaaccttaaaatatcattaagatttaaatatttgttagagtatttttaggatttgttagttttt- |
41091121 |
T |
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| Q |
400 |
nnnctttcttattttaatttaaagataaagatatgtgcttgaattataatttagccctttgcagagagctatgaagcacgaaaactcctcagatt |
494 |
Q |
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| T |
41091122 |
----tttcttattttaatttaaagataaagatatgtgcttgaattataatttagccctatgcagagagctatgaagcacgaacactcctcagatt |
41091212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 41100951 - 41101025
Alignment:
| Q |
55 |
ggtggcgttcaccttcaccggtggtagtggcacctcagccagtcaatgaggtccagatgggtccagtttgaagcc |
129 |
Q |
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| T |
41100951 |
ggtggcgttcaccctcaccggcgacagtggcacctgagccagttaatgaggcccagatgcttccagtttgaagcc |
41101025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 41079328 - 41079423
Alignment:
| Q |
32 |
gtgctacaaaatcttcatcaaatggtggcgttcaccttcaccggtggtagtggcacctcagccagtcaatgaggtccagatgggtccagtttgaag |
127 |
Q |
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| T |
41079328 |
gtgctacgaaatcttcatcaagtggtggcgttcatcctcaccggcgacagtggcgcctgagacgggtaatgaggtcgagatggttccagtttgaag |
41079423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 393
Target Start/End: Original strand, 41079749 - 41079826
Alignment:
| Q |
324 |
tatataaattaaaaccttaaaa-tatcattaagatttaaatat-------ttgttagagtatttttaggatttgttag |
393 |
Q |
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| T |
41079749 |
tatataaattaaatccttaaaggtatcattaagatttaaatttgaatattttgttagagtatttttaggatttgttag |
41079826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 41079650 - 41079680
Alignment:
| Q |
238 |
tgcatccaataaaatcatttttaggaactaa |
268 |
Q |
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| T |
41079650 |
tgcatccaataaaatcatttttaggaactaa |
41079680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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