View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8128_high_3 (Length: 460)
Name: NF8128_high_3
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_high_3 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 28 - 436
Target Start/End: Original strand, 11169878 - 11170286
Alignment:
| Q |
28 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169878 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
11169977 |
T |
|
| Q |
128 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11169978 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg |
11170077 |
T |
|
| Q |
228 |
gtaggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11170078 |
gtaggaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt |
11170177 |
T |
|
| Q |
328 |
gaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtccc |
427 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
11170178 |
gaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctacattgatgtttttacataactccgtccc |
11170277 |
T |
|
| Q |
428 |
actaccctt |
436 |
Q |
| |
|
||||||||| |
|
|
| T |
11170278 |
actaccctt |
11170286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 28 - 433
Target Start/End: Original strand, 11208700 - 11209105
Alignment:
| Q |
28 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
11208700 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag |
11208799 |
T |
|
| Q |
128 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt |
226 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||| || | |||| ||| ||||| |||| |||||| || | |||| |||| |
|
|
| T |
11208800 |
caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatatt |
11208898 |
T |
|
| Q |
227 |
ggtaggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatct |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11208899 |
ggtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatct |
11208998 |
T |
|
| Q |
327 |
tgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcc |
426 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11208999 |
tgaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatgcaactgcctcatctgcattgatgcttttacataactccgtcc |
11209098 |
T |
|
| Q |
427 |
cactacc |
433 |
Q |
| |
|
||||||| |
|
|
| T |
11209099 |
cactacc |
11209105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 38 - 426
Target Start/End: Original strand, 11275272 - 11275660
Alignment:
| Q |
38 |
taagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttg |
137 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| || || ||||| || ||||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
11275272 |
taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg |
11275371 |
T |
|
| Q |
138 |
tccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgactt-ttccctattggtaggaatc |
236 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| | ||| | || || |||| |||| | || |||||||||| |||| |||| | |||||||||||| |
|
|
| T |
11275372 |
tccttagttgttttcctctcaccctcataaatactaattgcaacaaatttttggttaggtatagttgtggtgaat-acttcttccttgttggtaggaatc |
11275470 |
T |
|
| Q |
237 |
gtggtattcctaggaattattacgctcatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatcttgaaactttt |
336 |
Q |
| |
|
|||||||||| |||| |||| |||||| ||| || | |||||||||| |||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
11275471 |
atggtattcctgggaaatattgttttcatgattccccattgtgttttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaactttt |
11275570 |
T |
|
| Q |
337 |
cacaaatcacaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcc |
426 |
Q |
| |
|
|||||| | ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
11275571 |
cacaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcc |
11275660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 418
Target Start/End: Original strand, 11196305 - 11196436
Alignment:
| Q |
287 |
tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca |
386 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||||||||| ||| |||| || | ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11196305 |
tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacagcagcgccatatgcc |
11196404 |
T |
|
| Q |
387 |
accgcctcatctgcattgatgcttttacataa |
418 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |
|
|
| T |
11196405 |
accgcctcatcgacattgatgcttttgcataa |
11196436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 418
Target Start/End: Original strand, 11160719 - 11160850
Alignment:
| Q |
287 |
tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca |
386 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||||||||| ||| |||| | | ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11160719 |
tccaagggacaaaggaatgacctccgacaatagtaaatcttgaaccttctcactacgctcaccactcaatatagaagcatggacagcagcgccatatgcc |
11160818 |
T |
|
| Q |
387 |
accgcctcatctgcattgatgcttttacataa |
418 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| |
|
|
| T |
11160819 |
actgcctcatcgacattgatgcttttgcataa |
11160850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 11155921 - 11155983
Alignment:
| Q |
356 |
tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa |
418 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
11155921 |
tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa |
11155983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 11199364 - 11199426
Alignment:
| Q |
356 |
tataaaagcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa |
418 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
11199364 |
tatagaagcatggacagcagcgccatatgccaccgcctcatcgacattgatgcttttgcataa |
11199426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
| Q |
99 |
ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat |
171 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
11196117 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat |
11196189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 11315240 - 11315188
Alignment:
| Q |
366 |
tggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
11315240 |
tggacagcagcgccatatgcaaccgccttatcagcattgatgcttttgcataa |
11315188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 418
Target Start/End: Complemental strand, 11242009 - 11241878
Alignment:
| Q |
287 |
tccaagggacaaaggattgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccacttgctataaaagcatggacagcagcgccatatgca |
386 |
Q |
| |
|
|||||||||||||| | |||| ||| |||| |||||||||| ||| |||| || | ||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
11242009 |
tccaagggacaaagaaatgacctccgacaatagtaaatcttgaaccttctcactaaactcaccactcaatatagaagcatggacaacagcgccatatgcc |
11241910 |
T |
|
| Q |
387 |
accgcctcatctgcattgatgcttttacataa |
418 |
Q |
| |
|
|| |||||||| ||||||||||||| ||||| |
|
|
| T |
11241909 |
acagcctcatcgacattgatgcttttgcataa |
11241878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 11319866 - 11319818
Alignment:
| Q |
304 |
tgacatccctcaatgtcaaatcttgaaacttttcacaaatcacaccact |
352 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
11319866 |
tgacttccctcaatgtcaaatcttgaaacttttcacaaaactcaccact |
11319818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
| Q |
126 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
175 |
Q |
| |
|
||||||||||| ||| ||||||||| ||||||||| |||||||||||||| |
|
|
| T |
11155697 |
agcaagttgttttccctagttattttcctctcaccttcataaacatgaat |
11155746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Original strand, 11132652 - 11132711
Alignment:
| Q |
363 |
gcatggacagcagcgccatatgcaaccgcctcatctgcattgatgcttttacataactcc |
422 |
Q |
| |
|
|||||||||||||| ||| |||||| || ||||||||||| |||||||| ||||||||| |
|
|
| T |
11132652 |
gcatggacagcagcaccacatgcaatagcttcatctgcatttatgcttttgcataactcc |
11132711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 11132411 - 11132471
Alignment:
| Q |
122 |
tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata |
182 |
Q |
| |
|
||||||||||||||| || ||||||||| || |||||||| |||||||||||| ||||| |
|
|
| T |
11132411 |
tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata |
11132471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 546 - 599
Alignment:
| Q |
378 |
ccatatgcaaccgcctcatctgcattgatgcttttacataactccgtcccacta |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
546 |
ccatatgcaaccgcctcatctgcattgatgcttttgcataacttcgtcctacta |
599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University