View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8128_high_4 (Length: 365)

Name: NF8128_high_4
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8128_high_4
NF8128_high_4
[»] chr1 (20 HSPs)
chr1 (19-336)||(24135586-24135904)
chr1 (198-322)||(29095584-29095710)
chr1 (198-322)||(34475910-34476036)
chr1 (198-322)||(1270182-1270308)
chr1 (198-322)||(31032759-31032885)
chr1 (198-322)||(20808958-20809084)
chr1 (206-322)||(16254874-16254991)
chr1 (198-322)||(9098631-9098754)
chr1 (198-322)||(42480132-42480258)
chr1 (198-322)||(47550802-47550928)
chr1 (206-322)||(34807955-34808073)
chr1 (245-323)||(2958752-2958832)
chr1 (198-322)||(45010211-45010336)
chr1 (198-310)||(4194777-4194891)
chr1 (234-322)||(44714870-44714960)
chr1 (197-270)||(41646586-41646660)
chr1 (207-293)||(50663751-50663839)
chr1 (278-322)||(4624438-4624482)
chr1 (207-255)||(7167455-7167503)
chr1 (205-233)||(2958713-2958741)
[»] chr2 (20 HSPs)
chr2 (198-322)||(13686004-13686130)
chr2 (198-322)||(42263842-42263968)
chr2 (198-322)||(41464961-41465087)
chr2 (208-322)||(25414934-25415050)
chr2 (205-322)||(3810331-3810450)
chr2 (205-322)||(28429299-28429418)
chr2 (211-322)||(19898943-19899056)
chr2 (205-322)||(14941049-14941169)
chr2 (198-322)||(29689282-29689405)
chr2 (198-312)||(35676349-35676465)
chr2 (198-322)||(45093211-45093333)
chr2 (205-322)||(2752695-2752814)
chr2 (205-322)||(35323537-35323656)
chr2 (198-319)||(16058437-16058561)
chr2 (198-294)||(23454350-23454449)
chr2 (198-288)||(28716435-28716527)
chr2 (266-322)||(28716379-28716435)
chr2 (198-314)||(36690891-36691008)
chr2 (228-322)||(40126562-40126658)
chr2 (200-233)||(41464911-41464944)
[»] scaffold0002 (1 HSPs)
scaffold0002 (198-322)||(492677-492803)
[»] chr3 (18 HSPs)
chr3 (198-321)||(1561318-1561443)
chr3 (209-322)||(521826-521941)
chr3 (198-322)||(45166237-45166363)
chr3 (198-322)||(50612936-50613062)
chr3 (198-318)||(31788316-31788438)
chr3 (198-322)||(38176451-38176577)
chr3 (209-322)||(36517536-36517651)
chr3 (198-322)||(34624538-34624663)
chr3 (205-322)||(52546760-52546879)
chr3 (207-322)||(20912187-20912304)
chr3 (197-322)||(23643041-23643168)
chr3 (198-322)||(39145262-39145388)
chr3 (198-322)||(51297087-51297212)
chr3 (227-318)||(9496570-9496663)
chr3 (207-257)||(43203268-43203318)
chr3 (227-306)||(38169329-38169408)
chr3 (265-322)||(22650457-22650514)
chr3 (198-240)||(544645-544687)
[»] chr6 (6 HSPs)
chr6 (198-322)||(7646836-7646962)
chr6 (207-321)||(12607123-12607239)
chr6 (198-322)||(25935519-25935645)
chr6 (230-320)||(29487579-29487671)
chr6 (198-258)||(17366861-17366921)
chr6 (231-311)||(29636999-29637081)
[»] chr5 (18 HSPs)
chr5 (198-322)||(32891185-32891311)
chr5 (198-322)||(4391907-4392033)
chr5 (208-322)||(3456773-3456889)
chr5 (198-322)||(228034-228160)
chr5 (198-322)||(34286605-34286730)
chr5 (198-322)||(37093973-37094099)
chr5 (205-322)||(11739281-11739400)
chr5 (198-322)||(8692519-8692645)
chr5 (198-309)||(41326523-41326636)
chr5 (205-322)||(38614242-38614364)
chr5 (205-322)||(29223483-29223600)
chr5 (198-322)||(28434212-28434338)
chr5 (205-322)||(35672372-35672490)
chr5 (264-322)||(6614308-6614366)
chr5 (262-322)||(40925912-40925972)
chr5 (207-258)||(31644658-31644709)
chr5 (205-318)||(5481376-5481485)
chr5 (280-322)||(31644721-31644763)
[»] chr4 (16 HSPs)
chr4 (198-322)||(24683087-24683213)
chr4 (198-312)||(41633228-41633344)
chr4 (198-322)||(18375453-18375578)
chr4 (198-315)||(26179279-26179398)
chr4 (205-322)||(37674062-37674181)
chr4 (205-322)||(47281594-47281717)
chr4 (242-322)||(54358167-54358249)
chr4 (198-322)||(17847604-17847725)
chr4 (207-322)||(23348175-23348295)
chr4 (227-322)||(47839004-47839101)
chr4 (261-322)||(41878592-41878653)
chr4 (259-322)||(4512225-4512288)
chr4 (240-311)||(54021318-54021391)
chr4 (205-258)||(41878339-41878392)
chr4 (227-320)||(30508982-30509076)
chr4 (198-235)||(4098532-4098569)
[»] chr8 (16 HSPs)
chr8 (198-322)||(4851744-4851870)
chr8 (198-322)||(39112659-39112785)
chr8 (209-322)||(36473111-36473226)
chr8 (198-322)||(15561976-15562102)
chr8 (198-322)||(29314010-29314136)
chr8 (198-322)||(34392119-34392245)
chr8 (207-322)||(41322549-41322666)
chr8 (198-321)||(8551500-8551625)
chr8 (218-322)||(2001679-2001784)
chr8 (206-322)||(11653773-11653894)
chr8 (198-322)||(1005600-1005726)
chr8 (216-320)||(37919603-37919709)
chr8 (228-322)||(11643324-11643420)
chr8 (227-306)||(4794161-4794242)
chr8 (227-324)||(5548975-5549074)
chr8 (200-233)||(36473061-36473094)
[»] chr7 (9 HSPs)
chr7 (205-322)||(27425815-27425934)
chr7 (198-322)||(23992012-23992138)
chr7 (205-322)||(22326876-22326995)
chr7 (205-322)||(17611860-17611979)
chr7 (205-318)||(8307543-8307655)
chr7 (228-322)||(42195418-42195514)
chr7 (228-308)||(25686406-25686488)
chr7 (227-295)||(41405803-41405873)
chr7 (198-254)||(19479452-19479508)
[»] scaffold0132 (2 HSPs)
scaffold0132 (207-292)||(556-642)
scaffold0132 (207-292)||(8516-8602)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 24135586 - 24135904
Alignment:
Q  19 actgatttagaagttcattctaacatatatcaacaaaatgcatgtaagtcgatattgcaagttgcacttaggtttacattctgatatatgttagagcata 118  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  24135586 actgatttagaagttcatcctaacatataccaacaaaatgcatgtaagtcgatattgcaagttgcacttaggtttacattctgatatatgtta---cata 24135682  T
Q  119 tttacaaactattaaccaacaaaaagtataaacatgggcagaaaaacaactcgtttgaattgtgtaattcaagagca----cgtatctcaagaaaaataa 214  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||    | |||||||||||||||||    
T  24135683 tttacaaattattaaccaacaaaaagtataaacctaggcagaaaaacaactcgtttgaattgtgtcattcaagagcaatgacatatctcaagaaaaataa 24135782  T
Q  215 catcaagaatttttcaagaataaagagcagccaatcacaatgcaatttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatca 314  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24135783 catcaagaattcttcaagaataaagagcagccaatcacaatgcaatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaaataaatca 24135882  T
Q  315 tgcaattataagagggtaaatt 336  Q
    |||||||| || ||||||||||    
T  24135883 tgcaattaaaaaagggtaaatt 24135904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 29095710 - 29095584
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  29095710 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatag 29095611  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||| | ||||||||||||    
T  29095610 gaagtgaacaaagatatcatgcaatta 29095584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 34475910 - 34476036
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||| |||||||||||||||||||||||||||||    
T  34475910 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatctgccccaattcaaggaggtgtggctgaaaaatag 34476009  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| ||||||||| |||||||||||||    
T  34476010 gaagtgaacaaatcaatcatgcaatta 34476036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 1270182 - 1270308
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||  ||||||||||||||||| |||||||||||||||||||    
T  1270182 tatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatctcaatgcactatttgccacaattcaagaaggtgtggctgaaaaatag 1270281  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||| ||||||||| ||||||||    
T  1270282 gaagtgaataaataaatcgtgcaatta 1270308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 31032885 - 31032759
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  31032885 tatctctagaaaaatatcatcaagaattcttcaagaataaagatcagtcaatcacaatgcactatttgccacagttcaaggaggtgtggctgaaaaatag 31032786  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || |||||||||||||||||||||||    
T  31032785 aaagtgaacaaataaatcatgcaatta 31032759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 20808958 - 20809084
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||  |||||||||||||||||||| |||||||||||| |||    
T  20808958 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcattatttgccacaattcaaggagatgtggctgaaaactag 20809057  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| ||||| |||||| |||| |||||    
T  20809058 gaagtgaacgaataaaccatgtaatta 20809084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 16254874 - 16254991
Alignment:
Q  206 gaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaa 303  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||||||||  |||||||| |||| ||||||||||||||||| |||||||| ||||    
T  16254874 gaaaaataacat-aagaattcttcaagaataaagatcagccaatcacaatgcactatttgccataatttaaggaggtgtggctgaataataggaagtgaa 16254972  T
Q  304 caaataaatcatgcaatta 322  Q
    |||||||||||| ||||||    
T  16254973 caaataaatcatacaatta 16254991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 9098754 - 9098631
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||  || ||||   ||||||| ||||||||||||| ||||     
T  9098754 tatctctagaaaaataacatcaagaattctttaagaataaagagcagccaatcacaatgcactatctgcc---attcaagaaggtgtggctgaataatac 9098658  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||||||||||||||    
T  9098657 gaagtgaacaaataaatcatgcaatta 9098631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 42480132 - 42480258
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | ||||||||||||||||||| |||||||||||| ||||| |||| |||||| |  |||| ||||||||||| ||||||||||||||||||||    
T  42480132 tatctctacaaaaataacatcaagaattcttcaagaataaatagcagtcaattacaatgtattatttaccacaattcaatgaggtgtggctgaaaaatag 42480231  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     ||||||| |||||||| |||||||||    
T  42480232 aaaatgaataaataaattatgcaatta 42480258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 47550802 - 47550928
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | ||||||||||| || ||  |||||||||||||||||||| ||| ||||||||  ||||||||||||| ||||||||||| || ||||||||    
T  47550802 tatctctataaaaataacattaaaaaaatttcaagaataaagagcagcaaattacaatgcactatttgccacaatttaaggaggtgtgactaaaaaatag 47550901  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    |||||||||| ||||||||||||||||    
T  47550902 gaaatgaacatataaatcatgcaatta 47550928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 34807955 - 34808073
Alignment:
Q  206 gaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatg--caatttgccacaattcaaggaggtgtggctgaaaaataggaaatgaa 303  Q
    |||||||||||||||||||| ||||| |||||||||||| |||||||||||  | ||||  || |||| |||||||||||||||||||||| ||| ||||    
T  34807955 gaaaaataacatcaagaattcttcaaaaataaagagcagtcaatcacaatgtactatttatcataatttaaggaggtgtggctgaaaaatatgaagtgaa 34808054  T
Q  304 caaataaatcatgcaatta 322  Q
     ||||||||||||||||||    
T  34808055 taaataaatcatgcaatta 34808073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 2958832 - 2958752
Alignment:
Q  245 ccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaattat 323  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  2958832 ccaatcacaatgcactatttgccaaaattcaaggaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaattat 2958752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 45010211 - 45010336
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | ||| ||||||||||||||| || |||||||||||||| ||||  | ||||||  ||||| ||||||||| | ||||||||||||||||||     
T  45010211 tatctctaaaaagataacatcaagaattctttaagaataaagagcatccaaatataatgcattatttgtcacaattca-gaaggtgtggctgaaaaataa 45010309  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||||||||||||||    
T  45010310 gaagtgaacaaataaatcatgcaatta 45010336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 198 - 310
Target Start/End: Original strand, 4194777 - 4194891
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcaca--atgcaatttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||||  || | |||| ||| ||||||| ||| | || |||||||||||    
T  4194777 tatctctagaaaaataacatcaagaattcttcaagaataaagaacagtcaatcacaatatactatttaccataattcaaagagatatgactgaaaaatag 4194876  T
Q  296 gaaatgaacaaataa 310  Q
    ||| |||||||||||    
T  4194877 gaagtgaacaaataa 4194891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 322
Target Start/End: Complemental strand, 44714960 - 44714870
Alignment:
Q  234 ataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||||| |||||||||||||  |||||||||||||||| ||| |||||||||||||||  |||| || ||||||||||| ||||||    
T  44714960 ataaagagcagtcaatcacaatgcattatttgccacaattcaacgagatgtggctgaaaaataaaaaataaaaaaataaatcatacaatta 44714870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 41646586 - 41646660
Alignment:
Q  197 gtatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaat 270  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||||||||||  ||||||||||||    
T  41646586 gtatctctagaaaaataacatca-gaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaat 41646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 50663751 - 50663839
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaat 293  Q
    |||||||||||||| |||||| ||||||||||||||||  ||| | ||||||  |||| |||||||||||||| ||||| |||||||||    
T  50663751 aaaaataacatcaaaaattttacaagaataaagagcagtgaatgataatgcattatttaccacaattcaaggacgtgtgactgaaaaat 50663839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 4624438 - 4624482
Alignment:
Q  278 ggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  4624438 ggtgtggctgaaaaataggaagtgaacaaataaatcatgcaatta 4624482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 7167503 - 7167455
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaat 255  Q
    ||||||||| ||||||||| |||||||||||||| ||| ||||||||||    
T  7167503 aaaaataacgtcaagaattcttcaagaataaagaacagtcaatcacaat 7167455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 2958713 - 2958741
Alignment:
Q  205 agaaaaataacatcaagaatttttcaaga 233  Q
    |||||||||||||||||||||||||||||    
T  2958713 agaaaaataacatcaagaatttttcaaga 2958741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 13686004 - 13686130
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcaat--ttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  13686004 tatctctagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtggctgaaaaatag 13686103  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||||||||||||||    
T  13686104 gaagtgaacaaataaatcatgcaatta 13686130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 42263842 - 42263968
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  42263842 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctgaaaaatag 42263941  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||||||||||| |||||||||    
T  42263942 gaaatgaacaaataaattatgcaatta 42263968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 41465087 - 41464961
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||  |||||||||||  ||||||| |||||||||||||||||| ||||||||||    
T  41465087 tatctctagaaaaataacatcaagaattcttcaagaataaagtgcagcggatcacaatgcactatttgccgcaattcaaggaggtgtggttgaaaaatag 41464988  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || |||||||||||||||||||||||    
T  41464987 aaagtgaacaaataaatcatgcaatta 41464961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 25414934 - 25415050
Alignment:
Q  208 aaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaaca 305  Q
    |||||||||||||||||| |||||||||||||| ||| |||||||||||||  |||||||||||||||||||||| ||||||||||| || || ||||||    
T  25414934 aaaataacatcaagaattcttcaagaataaagaacagtcaatcacaatgcactatttgccacaattcaaggaggtatggctgaaaaaaagaaagtgaaca 25415033  T
Q  306 aataaatcatgcaatta 322  Q
    |||||||||||||||||    
T  25415034 aataaatcatgcaatta 25415050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 3810450 - 3810331
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    ||||||||||||| || |||| ||||||||||||||| ||||||| ||||||||  ||||||||||||||||||||||||| |||||||||| ||| |||    
T  3810450 agaaaaataacattaataattcttcaagaataaagagtagccaattacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataagaagtga 3810351  T
Q  303 acaaataaatcatgcaatta 322  Q
    ||||||||||||||||||||    
T  3810350 acaaataaatcatgcaatta 3810331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 28429299 - 28429418
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    |||||||||| |||||||||| |||||||||||||||||||||| |||||||||  |||||||| |||| ||||||||||| |||||||||| ||| |||    
T  28429299 agaaaaataatatcaagaattcttcaagaataaagagcagccaaacacaatgcattatttgccataatttaaggaggtgtgactgaaaaataagaagtga 28429398  T
Q  303 acaaataaatcatgcaatta 322  Q
    ||||||||||||||||||||    
T  28429399 acaaataaatcatgcaatta 28429418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 19898943 - 19899056
Alignment:
Q  211 ataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaat 308  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||| | |||||||| |||||| |||||||||    
T  19898943 ataacattaagaattcttcaagaataaagagcagccaatcacaatgcattatttgtcacaattcaaggaggtattgctgaaaattaggaagtgaacaaat 19899042  T
Q  309 aaatcatgcaatta 322  Q
    ||||||||||||||    
T  19899043 aaatcatgcaatta 19899056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 14941169 - 14941049
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggct-gaaaaataggaaatg 301  Q
    |||||||||||||||| |||| |||||||||||||||||| |||||||||||||  |||||||||||||||| |||||||| || |||||||| ||| ||    
T  14941169 agaaaaataacatcaataattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaagaggtgtgactcgaaaaataagaagtg 14941070  T
Q  302 aacaaataaatcatgcaatta 322  Q
    ||||||||||||||| |||||    
T  14941069 aacaaataaatcatgaaatta 14941049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 29689405 - 29689282
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||   ||||||||||||  |||||| | ||||||||||||| || |||||||||||    
T  29689405 tatctctagaaaaataacatcaagaattttttaagaataaagagca---aatcacaatgcactatttgctataattcaaggaggtttgactgaaaaatag 29689309  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| ||||| |||||||||||||||||    
T  29689308 gaagtgaactaataaatcatgcaatta 29689282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 312
Target Start/End: Complemental strand, 35676465 - 35676349
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | ||||||||||||||||||| || ||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||| ||||||||||     
T  35676465 tatctctaaaaaaataacatcaagaattctttaagaataaagagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaaaatat 35676366  T
Q  296 gaaatgaacaaataaat 312  Q
    ||| |||||||||||||    
T  35676365 gaagtgaacaaataaat 35676349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 45093333 - 45093211
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||    |||||||||||  |||||||||||||||||||||| || |||||||||||    
T  45093333 tatctctagaaaaataacatcaataattcttcaagaataaagagca----atcacaatgcactatttgccacaattcaaggaggtatgactgaaaaatag 45093238  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| | ||||| |||||||||||||||    
T  45093237 gaagtaaacaattaaatcatgcaatta 45093211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 2752814 - 2752695
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    ||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||  |||||||||||||||||||| | || |||||||||| ||| |||    
T  2752814 agaaaaataacattaagaattcttcaagaaaaaatagcagccaatcacaatgcactatttgccacaattcaaggagatctgactgaaaaataagaagtga 2752715  T
Q  303 acaaataaatcatgcaatta 322  Q
    | ||||||||||| ||||||    
T  2752714 ataaataaatcatacaatta 2752695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 35323656 - 35323537
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    |||||||||||||||| |||| |||||||||||||| ||| |||||||||| ||  |||||||||||||||| |||||||||||||||||||  || |||    
T  35323656 agaaaaataacatcaaaaattcttcaagaataaagaacagtcaatcacaatacactatttgccacaattcaatgaggtgtggctgaaaaataaaaactga 35323557  T
Q  303 acaaataaatcatgcaatta 322  Q
    ||| |||||||||| |||||    
T  35323556 acatataaatcatgtaatta 35323537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 16058561 - 16058437
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca-atttgccacaattcaaggag--gtgtggctgaaaaata 294  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||| || | || | |||| | ||||| ||||||||||||||  ||||||||||||||||    
T  16058561 tatctctagaaaaataacattaagaattcttcaagaataaagagtagtctataataatgaacatttgtcacaattcaaggagttgtgtggctgaaaaata 16058462  T
Q  295 ggaaatgaacaaataaatcatgcaa 319  Q
     ||| |||| |||||||||||||||    
T  16058461 tgaagtgaataaataaatcatgcaa 16058437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 23454449 - 23454350
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgc---aatttgccacaattcaaggaggtgtggctgaaaaata 294  Q
    |||||| ||||||||||||| || |||| |||||||||||||||||| ||||||||||||   |||||| ||||||||||||||||| | ||||||||||    
T  23454449 tatctctagaaaaataacataaaaaattcttcaagaataaagagcagtcaatcacaatgcactaatttgacacaattcaaggaggtgcgactgaaaaata 23454350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 28716527 - 28716435
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctga 288  Q
    |||||| |||||||| |||||||||||| |||||||||||| || |||| |||||||||||  |||||||||||||||| |||||||||||||    
T  28716527 tatctctagaaaaatgacatcaagaattcttcaagaataaatagtagccgatcacaatgcactatttgccacaattcaaagaggtgtggctga 28716435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 28716435 - 28716379
Alignment:
Q  266 acaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  28716435 acaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaataatgcaatta 28716379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 36691008 - 36690891
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | ||| |||||||||| |||| ||||| |||||| | || ||||| | ||| ||  ||||||||||||||||||| | ||||||| ||| |||    
T  36691008 tatctctaaaaatataacatcaaaaattcttcaaaaataaaaaacatccaattataatacagtatttgccacaattcaaggaagcgtggctg-aaagtag 36690910  T
Q  296 gaaatgaacaaataaatca 314  Q
    ||| |||||||||||||||    
T  36690909 gaagtgaacaaataaatca 36690891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 40126658 - 40126562
Alignment:
Q  228 tcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||||||||||| || ||| ||||||  ||||  ||||||| ||| || | | | ||||||||||||| |||||||||||||||| ||||||    
T  40126658 tcaagaataaagagcagtcattcataatgcactatttatcacaatttaagaagatatagttgaaaaataggaagtgaacaaataaatcatacaatta 40126562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 41464911 - 41464944
Alignment:
Q  200 tctcaagaaaaataacatcaagaatttttcaaga 233  Q
    |||| |||||||||||||||||||||||||||||    
T  41464911 tctctagaaaaataacatcaagaatttttcaaga 41464944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 492677 - 492803
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  492677 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctgaaaaatag 492776  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||||||||||| |||||||||    
T  492777 gaaatgaacaaataaattatgcaatta 492803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 198 - 321
Target Start/End: Complemental strand, 1561443 - 1561318
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  1561443 tatctctagaaaaataacatcaagaattcttcaagaataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatag 1561344  T
Q  296 gaaatgaacaaataaatcatgcaatt 321  Q
    ||| ||||||||||||||||||||||    
T  1561343 gaagtgaacaaataaatcatgcaatt 1561318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 209 - 322
Target Start/End: Complemental strand, 521941 - 521826
Alignment:
Q  209 aaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaa 306  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  521941 aaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaacaa 521842  T
Q  307 ataaatcatgcaatta 322  Q
    ||||||||||||||||    
T  521841 ataaatcatgcaatta 521826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 45166237 - 45166363
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  45166237 tatctctagaaaaataacatcaagaattcttcaataataaagagcagccaatcacaatgcactatttgccacaattcaaggaggcgtggctgaaaaatag 45166336  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    | | || ||||||||||||||||||||    
T  45166337 ggagtggacaaataaatcatgcaatta 45166363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 50613062 - 50612936
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||     
T  50613062 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaatat 50612963  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || ||||||||||||| |||||||||    
T  50612962 aaagtgaacaaataaattatgcaatta 50612936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 198 - 318
Target Start/End: Original strand, 31788316 - 31788438
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||  ||||||||||    
T  31788316 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaattcaaggaggtgtgattgaaaaatag 31788415  T
Q  296 gaaatgaacaaataaatcatgca 318  Q
    ||| |||||||||||||| ||||    
T  31788416 gaagtgaacaaataaatcttgca 31788438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 38176577 - 38176451
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||||     
T  38176577 tatctctagaaaaatatcatcaagaattcttcaagaataaagagcagccaatcgcaatgcactatttgcctcaattcaaggaggtgtggctgaaaaatat 38176478  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||| ||||||||||    
T  38176477 gaagtgaacaaataaaacatgcaatta 38176451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 209 - 322
Target Start/End: Original strand, 36517536 - 36517651
Alignment:
Q  209 aaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaa 306  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||  | ||||||||||| |||||||    
T  36517536 aaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgccacaattcaaggaggtgtgaataaaaaataggaagtgaacaa 36517635  T
Q  307 ataaatcatgcaatta 322  Q
    ||||||||||||||||    
T  36517636 ataaatcatgcaatta 36517651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 34624663 - 34624538
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  |||| ||||||||  |||| |||||||||||||||||    
T  34624663 tatctctagaaaaataacat-aagaattcttcaagaataaagagcagccaatcacaatgcactatttaccacaatttgaggaagtgtggctgaaaaatag 34624565  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||||||||||||||    
T  34624564 gaagtgaacaaataaatcatgcaatta 34624538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 52546760 - 52546879
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaa--tgcaatttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||  ||| ||||| |||||||||| ||||||||  |||||||||||||||||    
T  52546760 agaaaaataacatcaaaaattcttcaagaataaagagcagccaatcacaatgtgctatttgtcacaattcaatgaggtgtgagtgaaaaataggaaatga 52546859  T
Q  303 acaaataaatcatgcaatta 322  Q
    |||||||||| |||||||||    
T  52546860 acaaataaattatgcaatta 52546879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 20912187 - 20912304
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaac 304  Q
    ||||||||||||||||||| |||||||||||||||||| |||| ||||||||  ||||| || |||| ||||||||||| |||||||||||||| |||||    
T  20912187 aaaaataacatcaagaattcttcaagaataaagagcagtcaataacaatgcactatttgtcataatttaaggaggtgtgactgaaaaataggaagtgaac 20912286  T
Q  305 aaataaatcatgcaatta 322  Q
    ||||||||||||||||||    
T  20912287 aaataaatcatgcaatta 20912304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 23643168 - 23643041
Alignment:
Q  197 gtatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaata 294  Q
    ||||||| ||||||||||||||||||||| |||||||||||| |  || |||||||||||||  ||||||||||||||||||||||||| || |||||||    
T  23643168 gtatctctagaaaaataacatcaagaattcttcaagaataaatattagtcaatcacaatgcactatttgccacaattcaaggaggtgtgactaaaaaata 23643069  T
Q  295 ggaaatgaacaaataaatcatgcaatta 322  Q
    |||| ||||||||||||| ||| |||||    
T  23643068 ggaagtgaacaaataaattatggaatta 23643041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 39145262 - 39145388
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||| |||||||||| || ||||||||| |||||||||| ||||||||  |||||| ||||||||| ||||| || |||||||||||    
T  39145262 tatctctagaaaaataatatcaagaattctttaagaataaaaagcagccaattacaatgcactatttgctacaattcaatgaggtatgactgaaaaatag 39145361  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    |||||||||||| ||||||| ||||||    
T  39145362 gaaatgaacaaagaaatcatacaatta 39145388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 51297212 - 51297087
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||||||||||| | || |||| ||||||| ||||||| |||||||||  ||||||||||||||||  |||| || |||||||||||    
T  51297212 tatctctagaaaaataacatcaagagtctt-caagcataaagaacagccaaccacaatgcactatttgccacaattcaaaaaggtatgactgaaaaatag 51297114  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || |||||||||||||||||||||||    
T  51297113 aaagtgaacaaataaatcatgcaatta 51297087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 9496570 - 9496663
Alignment:
Q  227 ttcaagaataaagagcagccaatcacaatgcaat--ttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgca 318  Q
    ||||||||||||||| ||||||||||||| || |  |||||||||| ||  | ||||| ||||||||||||| | |||||||||||||||||||    
T  9496570 ttcaagaataaagagtagccaatcacaattcactgtttgccacaatacacagtggtgttgctgaaaaatagggagtgaacaaataaatcatgca 9496663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 43203268 - 43203318
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgc 257  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  43203268 aaaaataacatcaagaattcttcaaaaataaagagcagccaatcacaatgc 43203318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 38169408 - 38169329
Alignment:
Q  227 ttcaagaataaagagcagccaatcacaatgcaatttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaa 306  Q
    ||||| ||||||||| || |||||||||| || |||| |||||| |||||||||||| || ||||||||||| |||||||    
T  38169408 ttcaataataaagagtagtcaatcacaatccactttgtcacaatacaaggaggtgtgactaaaaaataggaagtgaacaa 38169329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 22650514 - 22650457
Alignment:
Q  265 cacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||||| ||||||||||||||||||| ||  || |||||||||||||||||||||||    
T  22650514 cacaatttaaggaggtgtggctgaaaagtaaaaagtgaacaaataaatcatgcaatta 22650457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 544645 - 544687
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaaga 240  Q
    |||||| |||||||||||| |||||||| ||||||||||||||    
T  544645 tatctctagaaaaataacaccaagaattcttcaagaataaaga 544687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 7646962 - 7646836
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||    
T  7646962 tatctctagaaaaataacatcaagaattctttaaaaataaagagcagccaatcacaatgcactatttgccacaattcaaggatgtgtgactgaaaaatag 7646863  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    |||||||||||||||||||||||||||    
T  7646862 gaaatgaacaaataaatcatgcaatta 7646836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 207 - 321
Target Start/End: Complemental strand, 12607239 - 12607123
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaac 304  Q
    ||||| || |||||||||| |||||||||||||||||| |||||||| ||||  ||||||||||||| ||||||||||| ||||||||||| || |||||    
T  12607239 aaaaaaaaaatcaagaattcttcaagaataaagagcagtcaatcacagtgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtgaac 12607140  T
Q  305 aaataaatcatgcaatt 321  Q
    |||||||||||||||||    
T  12607139 aaataaatcatgcaatt 12607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 25935519 - 25935645
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||| | ||||| |||| |  ||||| ||||||| |||||||||||||||||||||||    
T  25935519 tatctctagaaaaataacattaagaattattcaagaataaagagcatctaatcataatgtactatttgtcacaatttaaggaggtgtggctgaaaaatag 25935618  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || ||||  ||||||||||| |||||    
T  25935619 aaagtgaaagaataaatcatgtaatta 25935645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 320
Target Start/End: Complemental strand, 29487671 - 29487579
Alignment:
Q  230 aagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaat 320  Q
    |||||||||||| || |||||||| ||||  ||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||    
T  29487671 aagaataaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggctgaaaaatagggagtgaacaaataaatcatgcaat 29487579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 17366861 - 17366921
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca 258  Q
    |||||| ||||||| ||||| |||||||||||||||||||||| |||| ||||||| ||||    
T  17366861 tatctctagaaaaacaacattaagaatttttcaagaataaagaacagctaatcacactgca 17366921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 311
Target Start/End: Original strand, 29636999 - 29637081
Alignment:
Q  231 agaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaa 311  Q
    |||||||||||||| |||||||||   |  |||||||||||| |||||||||   |||||||||||| || ||||||||||||    
T  29636999 agaataaagagcagtcaatcacaactaactatttgccacaatacaaggaggtaaagctgaaaaatagaaagtgaacaaataaa 29637081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 32891185 - 32891311
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||||    
T  32891185 tatctctagaaaaataacatcaagaattcttcaagaataaaaagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaagatag 32891284  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||||||||||||||    
T  32891285 gaagtgaacaaataaatcatgcaatta 32891311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 4392033 - 4391907
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcaat--ttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |  |||||||||||||||||| ||||||||||||||||    
T  4392033 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaattacaatgcactgtttgccacaattcaaggagctgtggctgaaaaatag 4391934  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| ||||||||||||| |||||||||    
T  4391933 gaagtgaacaaataaattatgcaatta 4391907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 3456773 - 3456889
Alignment:
Q  208 aaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaaca 305  Q
    |||||||||| | ||||| |||||||||||||||||| || ||||||||||  ||||||||||||||||||||||||| |||||||||||||| ||||||    
T  3456773 aaaataacattacgaattcttcaagaataaagagcagtcactcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataggaagtgaaca 3456872  T
Q  306 aataaatcatgcaatta 322  Q
    |||||||||||||||||    
T  3456873 aataaatcatgcaatta 3456889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 228034 - 228160
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||  |||||||||||||  |||| |||||||||||||||||||| ||||||| |||    
T  228034 tatctctagaaaaataacatcaagaatttttcaagaataaagaacaatcaatcacaatgcactatttaccacaattcaaggaggtgtgactgaaaagtag 228133  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || |||||||||| ||||||||||||    
T  228134 aaagtgaacaaatatatcatgcaatta 228160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 34286605 - 34286730
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | |||||||||||||| |||| |||||||||||| ||||||||||||| |||||  ||||||||||||| | | |||||||||||||||||||    
T  34286605 tatctctaaaaaaataacatcaataattattcaagaataaa-agcagccaatcacgatgcactatttgccacaattaatgaaggtgtggctgaaaaatag 34286703  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    |||||||||||||||||||||||||||    
T  34286704 gaaatgaacaaataaatcatgcaatta 34286730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 37094099 - 37093973
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||| |||||||| || |  |||||| |||||||||||||||||| |||||||||||    
T  37094099 tatctctagaaaaataacatcaacaattcttcaagaataaagagcagtcaatcacattgtactatttgcaacaattcaaggaggtgtgactgaaaaatag 37094000  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| ||||||||||||| |||||||||    
T  37093999 gaagtgaacaaataaattatgcaatta 37093973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 11739400 - 11739281
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcaat--ttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    ||||||||||||||||||||| |||||||||||| |||||  ||||| |||||| |  |||||||||||||||||||||||||||||||||||||  |||    
T  11739400 agaaaaataacatcaagaattcttcaagaataaaaagcaggtaatcataatgcactgtttgccacaattcaaggaggtgtggctgaaaaataggaggtga 11739301  T
Q  303 acaaataaatcatgcaatta 322  Q
    |||||||||| |||||||||    
T  11739300 acaaataaattatgcaatta 11739281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 8692519 - 8692645
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||| ||||||| |||| |  ||||||||||||||||||| ||||||| |||||||||    
T  8692519 tatctctagaaaaataacatcaagaattcttcaagaataaatagcatccaatcataatgtactatttgccacaattcaaggaagtgtggcagaaaaatag 8692618  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || |||| ||||||||||||||||||    
T  8692619 aaagtgaataaataaatcatgcaatta 8692645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 41326636 - 41326523
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatg--caatttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||| ||  | ||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||||||    
T  41326636 tatctctagaaaaataacatcacgatctcttcaagaataaagagcagccaatcacaatgtgctatttgacacaattcaaggaggtgtggctgaaaaatag 41326537  T
Q  296 gaaatgaacaaata 309  Q
    ||| | ||||||||    
T  41326536 gaagtaaacaaata 41326523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 38614364 - 38614242
Alignment:
Q  205 agaaaaataacatcaagaatttttc---aagaataaagagcagccaatcacaatgcaat--ttgccacaattcaaggaggtgtggctgaaaaataggaaa 299  Q
    ||||||||||||||||||||| |||   |||||||||||||  |||||||||||||| |  ||||||||||||||| || |||||||||||||||||||     
T  38614364 agaaaaataacatcaagaattcttcttcaagaataaagagcgcccaatcacaatgcactaattgccacaattcaagaagatgtggctgaaaaataggaag 38614265  T
Q  300 tgaacaaataaatcatgcaatta 322  Q
    | |||||||||||||||||||||    
T  38614264 taaacaaataaatcatgcaatta 38614242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 29223483 - 29223600
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    |||||||||| |||||||||| ||||| ||||| |||||| ||| |||||||||  ||||||||||||||||||||||||| |||||||||| ||| ||     
T  29223483 agaaaaataatatcaagaattcttcaa-aataa-gagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataagaagtgt 29223580  T
Q  303 acaaataaatcatgcaatta 322  Q
    ||||||||||||||||||||    
T  29223581 acaaataaatcatgcaatta 29223600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 28434212 - 28434338
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||||||  |||||| || || ||||||||||||||||| ||||||||  |||| |||||||| ||| || |||| ||| |||||||    
T  28434212 tatctctagaaaaataacattgagaattctttaaaaataaagagcagccaattacaatgcactatttaccacaatttaagaagatgtgactgtaaaatag 28434311  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     ||||||| ||||||||||||||||||    
T  28434312 aaaatgaataaataaatcatgcaatta 28434338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 35672490 - 35672372
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||  ||||  | ||||| |||||  ||| | | || |||||||| |||    
T  35672490 agaaaaataacattaagaatttttcaagaataaagagcagtcaatcacaatgcactatttatcgcaatttaaggaaatgttg-taaacaataggaagtga 35672392  T
Q  303 acaaataaatcatgcaatta 322  Q
    ||||||||||||||||||||    
T  35672391 acaaataaatcatgcaatta 35672372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 6614366 - 6614308
Alignment:
Q  264 ccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  6614366 ccacaattcaaggaggtgtgcctgaaaaataggaagtgaacaaataaatcatgcaatta 6614308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 40925912 - 40925972
Alignment:
Q  262 tgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  40925912 tgccacaattcaaagaggtgtggctgaaaaataggaagtgaacaaataaatcatacaatta 40925972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 31644658 - 31644709
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca 258  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  31644658 aaaaataacatcaataattcttcaagaataaagagcagccaatcacaatgca 31644709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 5481376 - 5481485
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    |||||||||| ||||| |||| || |||||||||      ||| ||||||||||  |||||||||||||||  ||| |||||||||||||||  || |||    
T  5481376 agaaaaataatatcaaaaattctttaagaataaa------ccattcacaatgcattatttgccacaattcatagagatgtggctgaaaaataaaaagtga 5481469  T
Q  303 acaaataaatcatgca 318  Q
    ||||||||||||||||    
T  5481470 acaaataaatcatgca 5481485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 31644721 - 31644763
Alignment:
Q  280 tgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||    
T  31644721 tgtggttgaaaaataggaagtgaacaaataaaccatgcaatta 31644763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 24683087 - 24683213
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||| | ||||||| |||||||||||    
T  24683087 tatctctagaaaaataacatcaagaattcttcaagaataaagagcagccaatcacaatgcactatttgccacaattcaggaaggtgtgactgaaaaatag 24683186  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||||||||||||||    
T  24683187 gaagtgaacaaataaatcatgcaatta 24683213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 198 - 312
Target Start/End: Original strand, 41633228 - 41633344
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  41633228 tatctctagaaaaataacattaagaattcttcaagaataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtggctgaaaaatag 41633327  T
Q  296 gaaatgaacaaataaat 312  Q
    ||| |||||||||||||    
T  41633328 gaagtgaacaaataaat 41633344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 18375578 - 18375453
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||||||||||| || | |||||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  18375578 tatctctagaaaaataacatcaagaattcttcaagaataaagtgcggtcaatcacaatgcactatttgccacaattcaaggaggtgtggctg-aaaatag 18375480  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||||||||||||||    
T  18375479 gaagtgaacaaataaatcatgcaatta 18375453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 198 - 315
Target Start/End: Complemental strand, 26179398 - 26179279
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||  ||||  |||||||||||||||||||||||||||||||    
T  26179398 tatctctagaaaaataacattaagaattcttcaagaataaagagcagccaatcacagtgcactatttaacacaattcaaggaggtgtggctgaaaaatag 26179299  T
Q  296 gaaatgaacaaataaatcat 315  Q
    ||| ||||||||||||||||    
T  26179298 gaagtgaacaaataaatcat 26179279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 37674181 - 37674062
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatg--caatttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||||||||  | |||| | ||||||||| |||||||||||||||||||  || | |    
T  37674181 agaaaaataacatcaagaattcttcaagactaaagagcagtcaatcacaatgtactatttactacaattcaaagaggtgtggctgaaaaataaaaagtta 37674082  T
Q  303 acaaataaatcatgcaatta 322  Q
    ||||||||||||||||||||    
T  37674081 acaaataaatcatgcaatta 37674062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 47281717 - 47281594
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaat----tcaaggaggtgtggctgaaaaataggaa 298  Q
    ||||||||||||||||||||| |||||||||||||| |  | ||||||||||||  |||||||||| |    |||||||||||||| |||||||||||||    
T  47281717 agaaaaataacatcaagaattcttcaagaataaagaacgacaaatcacaatgcactatttgccacattaatttcaaggaggtgtggttgaaaaataggaa 47281618  T
Q  299 atgaacaaataaatcatgcaatta 322  Q
     |||||||||||||||||||||||    
T  47281617 gtgaacaaataaatcatgcaatta 47281594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 54358167 - 54358249
Alignment:
Q  242 cagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    |||||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  54358167 cagccaatcacaatgcactatttgccacaatttaagggggtgtggctgaaaaataggaagtgaacaaataaatcatgcaatta 54358249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 17847725 - 17847604
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcaatttgccacaattcaaggaggtgtggctgaaaaatagga 297  Q
    |||||| ||||||||||||| || |||| ||||||| |||| ||||| |||||| ||||||    ||||||||||||||||||||| | ||||||||| |    
T  17847725 tatctctagaaaaataacataaaaaattcttcaagattaaaaagcagtcaatcataatgcac---gccacaattcaaggaggtgtgacagaaaaatagaa 17847629  T
Q  298 aatgaacaaataaatcatgcaatta 322  Q
    | |||||||||||||||||||||||    
T  17847628 agtgaacaaataaatcatgcaatta 17847604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 322
Target Start/End: Complemental strand, 23348295 - 23348175
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaat---aggaaatg 301  Q
    |||||||||||||| |||| || ||||||||||| ||  |||||||||| ||  |||| ||| ||||||||||||||||||||||||||   ||||| ||    
T  23348295 aaaaataacatcaataattctttaagaataaagaacactcaatcacaatacactatttaccataattcaaggaggtgtggctgaaaaataggaggaagtg 23348196  T
Q  302 aacaaataaatcatgcaatta 322  Q
    |||||||||||||||||||||    
T  23348195 aacaaataaatcatgcaatta 23348175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 322
Target Start/End: Complemental strand, 47839101 - 47839004
Alignment:
Q  227 ttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    |||||||||||||||||| ||| ||||||| |  ||||||||||||| ||||||||||||| ||||||||| ||||||||||| | ||||||||||||    
T  47839101 ttcaagaataaagagcagtcaaccacaatgtactatttgccacaatttaaggaggtgtggccgaaaaatagaaaatgaacaaaaacatcatgcaatta 47839004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 41878592 - 41878653
Alignment:
Q  261 ttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||    
T  41878592 ttgccacaattcaataaggtgtggctgaaaaataggaagtaaacaaataaatcatgcaatta 41878653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 4512288 - 4512225
Alignment:
Q  259 atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    |||||||||||||||||||| |||| |||||||||||||| | ||||||||||| |||||||||    
T  4512288 atttgccacaattcaaggagatgtgactgaaaaataggaagtaaacaaataaatgatgcaatta 4512225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 54021391 - 54021318
Alignment:
Q  240 agcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaa 311  Q
    |||||||||||||||||||  || |||||||||| |||||||||||| |||||||||| || | ||||||||||    
T  54021391 agcagccaatcacaatgcactatgtgccacaatttaaggaggtgtggttgaaaaatagaaagtaaacaaataaa 54021318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 41878339 - 41878392
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca 258  Q
    ||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||    
T  41878339 agaaaaataacatcatgaattcttcatgaataaagatcagccaatcacaatgca 41878392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 30508982 - 30509076
Alignment:
Q  227 ttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaat 320  Q
    |||||||||||||||||| |||| ||||| ||  ||||||| |||| ||  ||| |||  |||||||||||||||||||| ||||| |||||||||    
T  30508982 ttcaagaataaagagcagtcaattacaatacactatttgccgcaatacacagagatgtaactgaaaaataggaaatgaac-aataagtcatgcaat 30509076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 4098569 - 4098532
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaat 235  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  4098569 tatctctagaaaaataacatcaagaattcttcaagaat 4098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 4851744 - 4851870
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||  |||| |||||||| ||||| |||||||||||||||||    
T  4851744 tatctctagaaaaataacatcaagaattttttaagaataaagagcagtcaatcataatgcactattttccacaatttaaggaagtgtggctgaaaaatag 4851843  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||||| |||||||||||||||||||||    
T  4851844 gaaataaacaaataaatcatgcaatta 4851870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 39112659 - 39112785
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||  |||||||| |||||||||||||| |||||||||||||    
T  39112659 tatctctagaaaaataacatcaagaattcttcaaaaataaagagcaaccaatcacaatgcactatttgccataattcaaggaggtgcggctgaaaaatag 39112758  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || |||||||||||||||| ||||||    
T  39112759 aaagtgaacaaataaatcatccaatta 39112785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 322
Target Start/End: Complemental strand, 36473226 - 36473111
Alignment:
Q  209 aaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaa 306  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| | ||  ||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  36473226 aaataacatcaagaattcttcaagaataaagagcagtcaatcacagtacactatttgacacaatttaaggaggtgtggctgaaaaataggaagtgaacaa 36473127  T
Q  307 ataaatcatgcaatta 322  Q
    ||||||||||||||||    
T  36473126 ataaatcatgcaatta 36473111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 15562102 - 15561976
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    ||||||||||||||||||||||| ||  ||| ||||||||| | ||| |||||  ||||||  |||||||||||||||||||||||||||||||||||||    
T  15562102 tatctcaagaaaaataacatcaaaaaaattttaagaataaataacagtcaatcgtaatgcattatttgccacaattcaaggaggtgtggctgaaaaatag 15562003  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| |||||||||||||||| ||||||    
T  15562002 gaagtgaacaaataaatcatacaatta 15561976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 29314010 - 29314136
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| ||||||||||||||||||||| || |||||||||||| || |||||||||||||  ||||||||||||| ||||||||||| |||||||||||    
T  29314010 tatctctagaaaaataacatcaagaattgtttaagaataaagagaagtcaatcacaatgcactatttgccacaatttaaggaggtgtgactgaaaaatag 29314109  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || || |||||||||| |||||||||    
T  29314110 aaagtggacaaataaataatgcaatta 29314136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 34392119 - 34392245
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatg--caatttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | |||||||||||||||||||||||||||||||||||||  |||||||||||  | ||||||||||||| ||| |||||||||||||||||      
T  34392119 tatctctaaaaaaataacatcaagaatttttcaagaataaagagcactcaatcacaatgtactatttgccacaatttaagaaggtgtggctgaaaaatga 34392218  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || |||||||||||||||||||||||    
T  34392219 aaagtgaacaaataaatcatgcaatta 34392245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 41322549 - 41322666
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaac 304  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||  |||||  | |||||||||||||||||  |||||||||||| | |||    
T  41322549 aaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttgtgaaaattcaaggaggtgtggtagaaaaataggaagttaac 41322648  T
Q  305 aaataaatcatgcaatta 322  Q
    || |||||||||||||||    
T  41322649 aattaaatcatgcaatta 41322666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 8551500 - 8551625
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgcaat--ttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | ||||||||||| ||||||| ||| |||||||||| || |||||||||||||| |  ||||||||||| |||||| ||||| | ||||||||    
T  8551500 tatctctaaaaaaataacattaagaattcttcgagaataaagaacaaccaatcacaatgcattgtttgccacaattaaaggagatgtggttaaaaaatag 8551599  T
Q  296 gaaatgaacaaataaatcatgcaatt 321  Q
     |||||||||||||||||||||||||    
T  8551600 aaaatgaacaaataaatcatgcaatt 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 218 - 322
Target Start/End: Original strand, 2001679 - 2001784
Alignment:
Q  218 caagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcat 315  Q
    |||||||| |||||||||||||||||| |||||| ||| ||  ||||||||||||| ||||||||||||||| |||||||  | ||||||||||||||||    
T  2001679 caagaattcttcaagaataaagagcagtcaatca-aatacacgatttgccacaatttaaggaggtgtggctggaaaatagatagtgaacaaataaatcat 2001777  T
Q  316 gcaatta 322  Q
    | |||||    
T  2001778 gtaatta 2001784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 322
Target Start/End: Complemental strand, 11653894 - 11653773
Alignment:
Q  206 gaaaaataacatcaagaatttttcaagaataaagagcag----ccaatcacaatg--caatttgccacaattcaaggaggtgtggctgaaaaataggaaa 299  Q
    |||||||||||||||||||| ||||||||||||||||||     |||||| ||||  | ||||||||||||||||||| |||||||| ||||| || ||     
T  11653894 gaaaaataacatcaagaattcttcaagaataaagagcagtcaatcaatcataatgtactatttgccacaattcaaggatgtgtggcttaaaaa-agtaag 11653796  T
Q  300 tgaacaaataaatcatgcaatta 322  Q
    ||||||||||||||||| |||||    
T  11653795 tgaacaaataaatcatgtaatta 11653773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 1005600 - 1005726
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| |||||||||| || || |||| || |||||||||||| |  |||| | ||||||  ||||| ||||||| || |||||||| |||||||||||    
T  1005600 tatctctagaaaaataatattaaaaattcttaaagaataaagagtaatcaattataatgcaccatttgacacaatttaaagaggtgtgactgaaaaatag 1005699  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
    ||| ||||||||||||| |||||||||    
T  1005700 gaagtgaacaaataaattatgcaatta 1005726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 37919709 - 37919603
Alignment:
Q  216 atcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatc 313  Q
    ||||||||||||| ||||||||| | ||  |||||||||||||  ||||| ||||||| |||||| ||||  |||||||||| || ||||||||||||||    
T  37919709 atcaagaattttttaagaataaataacaatcaatcacaatgcattatttgtcacaatttaaggagatgtgagtgaaaaatagtaagtgaacaaataaatc 37919610  T
Q  314 atgcaat 320  Q
    |||||||    
T  37919609 atgcaat 37919603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 11643324 - 11643420
Alignment:
Q  228 tcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||||||||||||||| |||||||||||||  |||| |||||||| ||| | |||| | ||||||||| ||| |||||||||||||||| ||||||    
T  11643324 tcaagaataaagagcagtcaatcacaatgcactatttaccacaatttaagaaagtgtagttgaaaaatacgaagtgaacaaataaatcatacaatta 11643420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 4794161 - 4794242
Alignment:
Q  227 ttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaa 306  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||  | |||||| ||||  ||||||||||| |||||||    
T  4794161 ttcaagaataaatagcagccaatcacaatgcactatttgccacaatatatggaggtttggccaaaaaataggaagtgaacaa 4794242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 5548975 - 5549074
Alignment:
Q  227 ttcaagaataaagagcagccaatcacaatgcaat--ttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaattata 324  Q
    |||||||||||||||||| |||||| ||| || |  |||||| ||| || || |||||  ||||| |||||| | |||||||||||||||||||||||||    
T  5548975 ttcaagaataaagagcagtcaatcataattcagtacttgccataatacacggtggtgtccctgaacaatagggagtgaacaaataaatcatgcaattata 5549074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 36473061 - 36473094
Alignment:
Q  200 tctcaagaaaaataacatcaagaatttttcaaga 233  Q
    |||| |||||||||||||||||||||||||||||    
T  36473061 tctctagaaaaataacatcaagaatttttcaaga 36473094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 27425934 - 27425815
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    ||||||||||||||||||||| || ||||||||||| ||| |||||||||||||  |||||||||||||||||||| ||||| ||||||||||||| |||    
T  27425934 agaaaaataacatcaagaattcttaaagaataaagaacagtcaatcacaatgcattatttgccacaattcaaggagttgtggttgaaaaataggaagtga 27425835  T
Q  303 acaaataaatcatgcaatta 322  Q
    ||||||||||||||||||||    
T  27425834 acaaataaatcatgcaatta 27425815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 23992138 - 23992012
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    |||||| | ||| ||||||||||||||| |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  23992138 tatctctacaaatataacatcaagaattcttcaagaataaagagcagcctatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatag 23992039  T
Q  296 gaaatgaacaaataaatcatgcaatta 322  Q
     || |||||||| | ||||||||||||    
T  23992038 aaagtgaacaaaaatatcatgcaatta 23992012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 22326876 - 22326995
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    ||||||||||||||||||||| |||||||| ||||||| | ||||||||||| |  ||||||||||||||| ||||||||| ||||||||||| || |||    
T  22326876 agaaaaataacatcaagaattcttcaagaagaaagagccgtcaatcacaatgtactatttgccacaattcagggaggtgtgactgaaaaatagaaagtga 22326975  T
Q  303 acaaataaatcatgcaatta 322  Q
    ||||||||||||||||||||    
T  22326976 acaaataaatcatgcaatta 22326995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 17611860 - 17611979
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||| |||| |  |||||||||||||||||||| ||||||| ||||||||||| |||    
T  17611860 agaaaaataacatcaagaattcttcaagaataaagaacaaccaatcataatgaattatttgccacaattcaaggagatgtggctaaaaaataggaagtga 17611959  T
Q  303 acaaataaatcatgcaatta 322  Q
    | ||||||||||| ||||||    
T  17611960 ataaataaatcatacaatta 17611979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 8307543 - 8307655
Alignment:
Q  205 agaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatga 302  Q
    |||||||||||||||||||||||| |||||||||||  || |||||| ||||||  ||| |||||||||||   |||||||||| ||||||||||| |||    
T  8307543 agaaaaataacatcaagaattttttaagaataaagacgagtcaatcataatgcactattagccacaattca---aggtgtggctcaaaaataggaagtga 8307639  T
Q  303 acaaataaatcatgca 318  Q
    ||||||||||||||||    
T  8307640 acaaataaatcatgca 8307655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 42195418 - 42195514
Alignment:
Q  228 tcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaataaatcatgcaatta 322  Q
    ||||| || ||||||||  |||| |||||||  |||| |||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||    
T  42195418 tcaaggattaagagcagttaatctcaatgcactatttaccacaattcaaggaggtgtgtctgaaaaataaggagtgaacaaataaatcatgcaatta 42195514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 25686406 - 25686488
Alignment:
Q  228 tcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaaatgaacaaat 308  Q
    ||||||||||||| ||  |||||| |||| |  |||| |||||||| ||||||||||||||| |||||||||| | |||||||    
T  25686406 tcaagaataaagaacaatcaatcataatgtactatttaccacaatttaaggaggtgtggctggaaaataggaagtaaacaaat 25686488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 41405873 - 41405803
Alignment:
Q  227 ttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaatag 295  Q
    ||||||||||||||| || |  ||||||||||  |||||||||||| ||||||||| ||| ||||||||||    
T  41405873 ttcaagaataaagaggagtcggtcacaatgcactatttgccacaatacaaggaggtatggttgaaaaatag 41405803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 19479452 - 19479508
Alignment:
Q  198 tatctcaagaaaaataacatcaagaatttttcaagaataaagagcagccaatcacaa 254  Q
    |||||| |||||||||||||||| |||| ||||| ||||||||| |  |||||||||    
T  19479452 tatctctagaaaaataacatcaaaaattcttcaaaaataaagagtaatcaatcacaa 19479508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 292
Target Start/End: Original strand, 556 - 642
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaa 292  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||  ||||| ||||||| ||||||||||||||||||||    
T  556 aaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaaaa 642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 292
Target Start/End: Original strand, 8516 - 8602
Alignment:
Q  207 aaaaataacatcaagaatttttcaagaataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaa 292  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||  ||||| ||||||| ||||||||||||||||||||    
T  8516 aaaaataacatcaagaattcttcaagaataaagagcagtcaatcacaatgcactatttg-cacaatttaaggaggtgtggctgaaaaa 8602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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