View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8128_high_6 (Length: 287)

Name: NF8128_high_6
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8128_high_6
NF8128_high_6
[»] chr6 (6 HSPs)
chr6 (152-278)||(6553183-6553309)
chr6 (1-93)||(6553368-6553460)
chr6 (165-255)||(30767933-30768023)
chr6 (33-89)||(30768099-30768155)
chr6 (6-55)||(20238968-20239013)
chr6 (6-55)||(22132952-22132997)
[»] chr4 (3 HSPs)
chr4 (152-281)||(39634272-39634401)
chr4 (36-90)||(39634156-39634210)
chr4 (5-55)||(33906321-33906367)
[»] chr5 (3 HSPs)
chr5 (173-267)||(6276994-6277089)
chr5 (1-92)||(6277159-6277246)
chr5 (1-31)||(32732713-32732743)
[»] chr7 (5 HSPs)
chr7 (152-213)||(1098349-1098410)
chr7 (33-91)||(1098473-1098531)
chr7 (1-31)||(47243870-47243900)
chr7 (156-189)||(31600185-31600218)
chr7 (5-50)||(31600111-31600152)
[»] chr2 (3 HSPs)
chr2 (152-214)||(32491845-32491907)
chr2 (33-92)||(32491966-32492025)
chr2 (1-50)||(11710957-11711004)
[»] chr1 (5 HSPs)
chr1 (160-246)||(4125770-4125855)
chr1 (152-229)||(21906856-21906932)
chr1 (5-89)||(24987045-24987127)
chr1 (153-269)||(24987192-24987307)
chr1 (152-266)||(21908289-21908402)
[»] chr3 (1 HSPs)
chr3 (1-92)||(45012484-45012571)
[»] chr8 (1 HSPs)
chr8 (1-55)||(35958222-35958272)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 152 - 278
Target Start/End: Complemental strand, 6553309 - 6553183
Alignment:
Q  152 taatagtgcatatgttctagggttaaatgtgtttttagtaaatgacaaattattcaggataacccgagtttgattcttgagcagaataattttttgccaa 251  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6553309 taataatgtatatgttctagggttaaatgtgtttttagtaaatgtcaaattattcaggataacccgagtttgattcttgagcagaacaattttttgccaa 6553210  T
Q  252 actttagttacctctcggatgaactcc 278  Q
    |||||||||||||||||||||||||||    
T  6553209 actttagttacctctcggatgaactcc 6553183  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 6553460 - 6553368
Alignment:
Q  1 ttttttaaagaaatttataactatatttaattagtatgagagacattaataggtatgtacagttatcatacaagtattgacttaatagtagag 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6553460 ttttttaaagaaatttataactatatttaattagtatgagagacattaataggtatgtacagttatcatacaagtattgacttaataatagag 6553368  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 30768023 - 30767933
Alignment:
Q  165 gttctagggttaaatgtgtttttagtaaatgacaaattattcaggataacccgagtttgattcttgagcagaataattttttgccaaactt 255  Q
    |||||||||||| |||||||||| | ||||| |||||| |||||||||||| |||||||||| ||||| |||| |||||||| ||||||||    
T  30768023 gttctagggttatatgtgtttttcgcaaatgtcaaattgttcaggataacctgagtttgatttttgagtagaacaattttttaccaaactt 30767933  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 30768155 - 30768099
Alignment:
Q  33 agtatgagagacattaataggtatgtacagttatcatacaagtattgacttaatagt 89  Q
    ||||| ||||||||||||| ||| ||| | |||||||||||||||||||||||||||    
T  30768155 agtataagagacattaataagtaagtatacttatcatacaagtattgacttaatagt 30768099  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 20238968 - 20239013
Alignment:
Q  6 taaagaaatttataactatatttaattagtatgagagacattaataggta 55  Q
    |||||||||||||||||||||    |||||||||||||||||||| ||||    
T  20238968 taaagaaatttataactatat----ttagtatgagagacattaatcggta 20239013  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 22132952 - 22132997
Alignment:
Q  6 taaagaaatttataactatatttaattagtatgagagacattaataggta 55  Q
    |||||||||||||||||||||    |||||||||||||||||||| ||||    
T  22132952 taaagaaatttataactatat----ttagtatgagagacattaatcggta 22132997  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 39634272 - 39634401
Alignment:
Q  152 taatagtgcatatgttctagggttaaatgtgtttttagtaaatgacaaattattcaggataacccgagtttgattcttgagcagaataattttttgccaa 251  Q
    |||||||| |||  |||||||||||||||||||||||  |||| ||||||| |||||||||||  ||||| |||||||||| |||| ||||||| | |||    
T  39634272 taatagtgaatacattctagggttaaatgtgtttttaacaaataacaaattgttcaggataacatgagttcgattcttgagtagaacaatttttggtcaa 39634371  T
Q  252 actttagttacctctcggatgaactccaaa 281  Q
    |||||| |||||||| ||  ||||||||||    
T  39634372 actttacttacctcttggtcgaactccaaa 39634401  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 39634156 - 39634210
Alignment:
Q  36 atgagagacattaataggtatgtacagttatcatacaagtattgacttaatagta 90  Q
    |||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||    
T  39634156 atgagagacattaataagtaagtatagttatcatacaagtatagacttaatagta 39634210  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 33906367 - 33906321
Alignment:
Q  5 ttaaagaaatttataactatatttaattagtatgagagacattaataggta 55  Q
    ||||||||||||||||||||||| ||    |||||||||||||||||||||    
T  33906367 ttaaagaaatttataactatattcaa----tatgagagacattaataggta 33906321  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 6277089 - 6276994
Alignment:
Q  173 gttaaatgtgtttttagtaaatgacaaattattcaggataacccgagtttgattcttgagcagaata-attttttgccaaactttagttacctctc 267  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| |||| |  ||||||  |||||||||||||||||||    
T  6277089 gttaaatgtgtgtttcgtaaatgacaaattattcaggataacctgagtttgatttttgagtagaacagtttttttttcaaactttagttacctctc 6276994  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 6277246 - 6277159
Alignment:
Q  1 ttttttaaagaaatttataactatatttaattagtatgagagacattaataggtatgtacagttatcatacaagtattgacttaatagtaga 92  Q
    ||||||||||||||||||||||||||| | ||    |||||||||||||| | || ||| ||||||||||||||||||||||||||||||||    
T  6277246 ttttttaaagaaatttataactatattcagtt----tgagagacattaatggttaagtatagttatcatacaagtattgacttaatagtaga 6277159  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 32732713 - 32732743
Alignment:
Q  1 ttttttaaagaaatttataactatatttaat 31  Q
    |||||||||||||||||||||||||||||||    
T  32732713 ttttttaaagaaatttataactatatttaat 32732743  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 1098410 - 1098349
Alignment:
Q  152 taatagtgcatatgttctagggttaaatgtgtttttagtaaatgacaaattattcaggataa 213  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  1098410 taatagtgcttatgttctagggttaaatatgtttttagtaaatgaaaaattattcaggataa 1098349  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 1098531 - 1098473
Alignment:
Q  33 agtatgagagacattaataggtatgtacagttatcatacaagtattgacttaatagtag 91  Q
    ||||||||||||||||||||| | ||| | ||||||| |||||||||||||||||||||    
T  1098531 agtatgagagacattaataggcaagtataattatcattcaagtattgacttaatagtag 1098473  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 47243870 - 47243900
Alignment:
Q  1 ttttttaaagaaatttataactatatttaat 31  Q
    |||||||||||||||||||||||||||||||    
T  47243870 ttttttaaagaaatttataactatatttaat 47243900  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 31600185 - 31600218
Alignment:
Q  156 agtgcatatgttctagggttaaatgtgtttttag 189  Q
    |||||||||||||||||||||||| |||||||||    
T  31600185 agtgcatatgttctagggttaaatatgtttttag 31600218  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 31600111 - 31600152
Alignment:
Q  5 ttaaagaaatttataactatatttaattagtatgagagacattaat 50  Q
    ||||||||||||||||||||||    ||||||||||||||||||||    
T  31600111 ttaaagaaatttataactatat----ttagtatgagagacattaat 31600152  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 32491907 - 32491845
Alignment:
Q  152 taatagtgcatatgttctagggttaaatgtgtttttagtaaatgacaaattattcaggataac 214  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  32491907 taatagtgcataccttctagggttaaatgtgtttttagtaaatgacaaattgttcaagataac 32491845  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 32492025 - 32491966
Alignment:
Q  33 agtatgagagacattaataggtatgtacagttatcatacaagtattgacttaatagtaga 92  Q
    ||||||||||||||||||||||| ||| ||||||||| | |  ||||| |||||||||||    
T  32492025 agtatgagagacattaataggtaagtatagttatcatgcgaacattgatttaatagtaga 32491966  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11710957 - 11711004
Alignment:
Q  1 ttttttaaagaaatttataactatatttaattagtatgagagacattaat 50  Q
    |||||||||||||||||||||||||  || |||||| |||||||||||||    
T  11710957 ttttttaaagaaatttataactata--tatttagtaggagagacattaat 11711004  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 4125770 - 4125855
Alignment:
Q  160 catatgttctagggttaaatgtgtttttagtaaatgacaaattattcaggataacccgagtttgattcttgagcagaataatttttt 246  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||  || || |||||||||  |||||||||||||    
T  4125770 catatgttctagtgttaaatgt-tttttagtaaatgaaaaattattcagaataacttgaattcgattcttgaatagaataatttttt 4125855  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 21906932 - 21906856
Alignment:
Q  152 taatagtgcatatgttctagggttaaatgtgtttttagtaaatgacaaattattcaggataacccgagtttgattctt 229  Q
    ||||||||||||||||||||  |||||||||||||||  ||||||| |||| |||||||||||   ||||||||||||    
T  21906932 taatagtgcatatgttctaga-ttaaatgtgtttttaacaaatgacgaattgttcaggataacttaagtttgattctt 21906856  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 24987045 - 24987127
Alignment:
Q  5 ttaaagaaatttataactatatttaattagtatgagagacattaataggtatgtacagttatcatacaagtattgacttaatagt 89  Q
    |||||||||||||||||||| | |  |||| |||||||||||||||| ||| ||| || |||| ||||||||||| |||||||||    
T  24987045 ttaaagaaatttataactatgtat--ttagcatgagagacattaataagtaagtatagctatcgtacaagtattgtcttaatagt 24987127  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 24987192 - 24987307
Alignment:
Q  153 aatagtgcatatgttctagggttaaatgtgtttttagtaaatgacaaattattcaggataacccgagtttgattcttgagcagaataattttttgccaaa 252  Q
    ||||||||||| |||||||  |||||||||||||||| |||||||||| | ||||| ||||   ||||| ||||||| || |||| |||| ||  |||||    
T  24987192 aatagtgcatacgttctaga-ttaaatgtgtttttagcaaatgacaaaattttcagtataatatgagttcgattcttaagtagaacaattcttgaccaaa 24987290  T
Q  253 ctttagttacctctcgg 269  Q
     |||| ||| |||||||    
T  24987291 ttttacttaactctcgg 24987307  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 21908402 - 21908289
Alignment:
Q  152 taatagtgcatatgttctagggttaaatgtgtttttagtaaatgacaaattattcaggataacccgagtttgattcttgagcagaataattttttgccaa 251  Q
    |||||||||||| ||| |||  ||||||||||||||||  |||||| |||| |||| ||||||  ||||||||||||| || |||| || ||||  ||||    
T  21908402 taatagtgcatacgttttaga-ttaaatgtgtttttagagaatgacgaattgttcaagataacttgagtttgattcttaagtagaacaaattttgaccaa 21908304  T
Q  252 actttagttacctct 266  Q
    | |||| ||| ||||    
T  21908303 attttacttaactct 21908289  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 45012571 - 45012484
Alignment:
Q  1 ttttttaaagaaatttataactatatttaattagtatgagagacattaataggtatgtacagttatcatacaagtattgacttaatagtaga 92  Q
    |||||||||||||||||||| |||||| |    ||||||||| |||| ||| | | |||  |||||||||||||||||||||||||||||||    
T  45012571 ttttttaaagaaatttataattatattca----gtatgagaggcattgataagaaagtatggttatcatacaagtattgacttaatagtaga 45012484  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35958272 - 35958222
Alignment:
Q  1 ttttttaaagaaatttataactatatttaattagtatgagagacattaataggta 55  Q
    ||||||||||||||||||||||||||| ||    |||||||||||||||||||||    
T  35958272 ttttttaaagaaatttataactatattcaa----tatgagagacattaataggta 35958222  T

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