View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8128_low_1 (Length: 783)
Name: NF8128_low_1
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_1 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 599; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 18 - 773
Target Start/End: Original strand, 9829780 - 9830533
Alignment:
| Q |
18 |
aaaggaaggtagtaaaatagtattccctgttaaagagagattgatgagagtcatatagtagttttatcatcatttaggagctagttttaggtctttctag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829780 |
aaaggaaggtagtaaaatagtattccctgttaaagagagattgatgacagacatatagtagttttatcatcatttaggagctagttttaggtctttctag |
9829879 |
T |
|
| Q |
118 |
taaagtttcagttgttttagtcgagtctttgaaaataaatcaacatggatgcacaaaagagagaaaaatgaagaatgggaccttgaaacatgacaatcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829880 |
taaagtttcagttgttttagtcgagtctttgaaaataaatcaacatggatgcgcaaaagagagaaaaatgaagaatgggaccttgaaacatgacaatcac |
9829979 |
T |
|
| Q |
218 |
tcaaaccaagcaacttcatggtcacattatactttttataagaatagcaaagtgatttcttggggtatagtcactacggccattgcggtgaggcgaaatg |
317 |
Q |
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| T |
9829980 |
ttaaaccaggcaacttcatggtcgcattatactctttacaagaatatcaaagtgttttcttggggtatagtcactacggacatttcggtgaggcgaaatg |
9830079 |
T |
|
| Q |
318 |
cgataaggaatgaaacatcacaaatgagtcaaccaatggaagaagcgtgatgcatgtgttgagccacgtgtcgcacaatgacaagggaattctgaatgaa |
417 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| | |
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| T |
9830080 |
cgataaggaatgaagcatcacaaatgagtcaaccattggaagaagcgtgatgcatgtgttgagccacgt-tcgcacaatcacaagggaattcagaatgga |
9830178 |
T |
|
| Q |
418 |
accacactgcctaagccgtgacacgtgctatgagccacacatcgcgccatcatgnnnnnnnntcgaagtggatcactaccacccttgatgtgacgcagta |
517 |
Q |
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| T |
9830179 |
accacactgcctaagacgtgacacgtgctatgagccacacatcgcgccatcatg-aaaaaaatcgaagtggatcgctaccgcccttgatgtgaagcagta |
9830277 |
T |
|
| Q |
518 |
aagctggtgtgcatcatgcacacactgctttagaaagtcatggtttacatgcttataaatacagatgccttgtctcacttgaaaaacacactttaacgat |
617 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9830278 |
aagctggtgtgcatcatgcacacactgttttagaaagtcatggtttacatgcttataaatacagatgcattgtctcacttgaaaaacacactttaacgat |
9830377 |
T |
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| Q |
618 |
gagcgaaagtcgatactacaatttaggaaggttaccagtgaggaatcaaccaacgatgcttacaattcatgtatttctatacatattattttgtttaggt |
717 |
Q |
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| T |
9830378 |
gagcgaaagtcgatattgcaatttaggaaggttaccagcgagaaatcaaccaacgatgcttacaattcatgtatttctatacatattattttgtttaggt |
9830477 |
T |
|
| Q |
718 |
ttaaaatatcatgagtcgttgatttcctaggttatgtcatatagatgaccatctct |
773 |
Q |
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|||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |
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| T |
9830478 |
ttaaaatatcatgagtagctgatttcctaagttatgtcatatagatgaccatctct |
9830533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 661 - 712
Target Start/End: Original strand, 24555233 - 24555284
Alignment:
| Q |
661 |
aatcaaccaacgatgcttacaattcatgtatttctatacatattattttgtt |
712 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
24555233 |
aatcaaccaacgatgcttacaattcatgtatttctttgcatattcttttgtt |
24555284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 6623250 - 6623200
Alignment:
| Q |
244 |
ttatactttttataagaatagcaaagtgatttcttggggtatagtcactac |
294 |
Q |
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| T |
6623250 |
ttatactttgtacaagattatcaaagtgatttcttggggaatagtcactac |
6623200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 6790014 - 6789965
Alignment:
| Q |
245 |
tatactttttataagaatagcaaagtgatttcttggggtatagtcactac |
294 |
Q |
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| T |
6790014 |
tatactttgtacaagattatcaaagtgatttcttggggaatagtcactac |
6789965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 18851634 - 18851562
Alignment:
| Q |
245 |
tatactttttataagaatagcaaagtgatttcttggggtatagtcactacggccattgcggtgaggcgaaatg |
317 |
Q |
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| T |
18851634 |
tatacattctataagattatcaaagtgatttcttggggtatagtcactacgaacattttggtgaggcaaaatg |
18851562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 12674 - 12624
Alignment:
| Q |
244 |
ttatactttttataagaatagcaaagtgatttcttggggtatagtcactac |
294 |
Q |
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||||||||| || |||| || |||||||||||||||||| ||||||||||| |
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| T |
12674 |
ttatactttgtacaagattatcaaagtgatttcttggggaatagtcactac |
12624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 655 - 733
Target Start/End: Original strand, 3004179 - 3004257
Alignment:
| Q |
655 |
gtgaggaatcaaccaacgatgcttacaattcatgtatttctatacatattattttgtttaggtttaaaatatcatgagt |
733 |
Q |
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|||||||||| |||||||||| ||| |||||||||||||| | ||||| |||| ||| |||||||||| ||||||| |
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| T |
3004179 |
gtgaggaatcgaccaacgatgattatgattcatgtatttcttttcatatacttttatttttgtttaaaataacatgagt |
3004257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 47236506 - 47236587
Alignment:
| Q |
67 |
gtcatatagtagttttatcatcatttaggagctagttttaggtctttctagtaaagtttcagttgttttagtcgagtctttg |
148 |
Q |
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| T |
47236506 |
gtcatttattagatttagcatcgtttaggagttagttttaagtccttatagcaaagtctcatttgttttagtcgagtttttg |
47236587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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