View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8128_low_11 (Length: 285)
Name: NF8128_low_11
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 19171953 - 19172204
Alignment:
| Q |
15 |
agacaaagcttcaagaaacaaagcagcttgataaacacttgcagctctaataatatcaacaagaacacttctccttaacctatttgcataaagaacaaca |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19171953 |
agacaaagcttcaagaaacaatgcagcttgataaacacttgcagcactaataatatcaacaagaacacttctccttaacctatttgcataaagaacaaca |
19172052 |
T |
|
| Q |
115 |
ctaacaaactcttctatgtaaaccctaacatcatttcccaaaacagctttccctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19172053 |
ctaacaaactcttctatgtaaaccctaacatcatttcccaaaacaactttccctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgt |
19172152 |
T |
|
| Q |
215 |
gttcaacgaaacagccttccgcgcgtgtaagcctatcgttaagtgttggaac |
266 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19172153 |
ttttaatgaaacagccttccgcgcgtgtaagcctatcgttaagcgttggaac |
19172204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University