View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8128_low_12 (Length: 270)
Name: NF8128_low_12
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 1865460 - 1865704
Alignment:
| Q |
18 |
gtttggcactgatggaaaagctgtagaggttaatccaaatatcggagatgctattctacatggtgtggattcaaatttatctaacgcgtttaataatggt |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865460 |
gtttggcattgatggaaaagctgtagaggttaatccaaatatcggagatgctattctacatggtgtggattcaaatttatctaacgcgtttaataatggt |
1865559 |
T |
|
| Q |
118 |
gggtcatcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactcaaaatacaaacatgagtctacaacaaggaatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865560 |
gggtcatcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactcaaaatacaaacatgagtctacaacaaggaatca |
1865659 |
T |
|
| Q |
218 |
gttggggggcaaacatatcaaaacctagatattcaagttcttctc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865660 |
gttggggggcaaacatatcaaaacctagatattcaagttcttctc |
1865704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 69 - 262
Target Start/End: Original strand, 1865259 - 1865452
Alignment:
| Q |
69 |
tattctacatggtgtggattcaaatttatctaacgcgtttaataatggtgggtcatcatctggtattattgatatgtcttttcatggagatatttcaagt |
168 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| | ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1865259 |
tattctacatggtgtagattcaagtttatctaatac---taaaaatggtggatcatcatccggtattattgatatgtcttttcatggagatatttcaaat |
1865355 |
T |
|
| Q |
169 |
gtgcc---ttataatactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctc |
262 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1865356 |
gtgtcgacttataatactcaaaatacaaacatgagtctacaacaaggaatcagtgggggggcaaacatatcaaaacctggatattcaagttcttctc |
1865452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 51575399 - 51575275
Alignment:
| Q |
93 |
tttatctaacgcgtttaataatggtgggtcatcatctggtattattgatatgtcttttcatggagatatttcaagtgtgccttataatactcaaaataca |
192 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||||| |||||| ||||| ||||| || ||| ||||||||||| ||||||||||||||| || || |
|
|
| T |
51575399 |
tttatctaacgtgtctaatagcggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcatgccttataatactcggaactca |
51575300 |
T |
|
| Q |
193 |
aacatgagtctacaacaaggaatca |
217 |
Q |
| |
|
|||||| ||||||| |||| ||||| |
|
|
| T |
51575299 |
aacatgggtctacaccaagaaatca |
51575275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University