View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8128_low_19 (Length: 223)
Name: NF8128_low_19
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 8636140 - 8635961
Alignment:
| Q |
16 |
aaagttagtcttttgtccattggtcgatcaatggatggtggttgtctttaatcgggtaccttttacgctaattagtttttccactgtgttgaggaatttg |
115 |
Q |
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| T |
8636140 |
aaagttagtcttttgtccattgttcgatcaatggatggtgtttgtctttaatcgggtaccttttacgctaattagtttttccactgtgttgaggaatttg |
8636041 |
T |
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| Q |
116 |
gagaataatcaaatggttcttcaagacaaagctgcacttcaagagcttgctggagattcaagagatccaaaacttgcggt |
195 |
Q |
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| T |
8636040 |
gagaataatcaaatggttcttcaagacaaagctgcacttcaagagcttgctggagattcaagagagccaacacttgcggt |
8635961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 8622940 - 8623052
Alignment:
| Q |
16 |
aaagttagtcttttgtccattggtcgatcaatggatggtggttgtctttaat--cgggtaccttttacgctaattagtttttccactgtgttgaggaatt |
113 |
Q |
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| T |
8622940 |
aaagttagtcttttgtccattgttcgatcaatgtatggtattttttttttaggccgggtatcttttacgctaattagttcttccactgggttgaggaatt |
8623039 |
T |
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| Q |
114 |
tggagaataatca |
126 |
Q |
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| T |
8623040 |
tggagaataatca |
8623052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 43914798 - 43914634
Alignment:
| Q |
16 |
aaagttagtcttttgtccattggtcgatcaatggatggtggttgtctttaa--tcgggtaccttttacgctaattagtttttccactgtgttgaggaatt |
113 |
Q |
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| T |
43914798 |
aaagttagttctttgtccattgttcgatcaatggttgctgtttgtcttttaagtcgagtacctttttcacctattgattcttccactttattgtggaaat |
43914699 |
T |
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| Q |
114 |
tggagaataatcaaatggttcttc---aagacaaagctgcacttcaagagcttgctggagattca |
175 |
Q |
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| T |
43914698 |
tggagaacgatcaaacggttatgccacaagacaaagccgcacttcaagagcttggtggagattca |
43914634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 42837616 - 42837654
Alignment:
| Q |
137 |
caagacaaagctgcacttcaagagcttgctggagattca |
175 |
Q |
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| T |
42837616 |
caagacaaagctgcatttcaagagcttgctggagattca |
42837654 |
T |
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