View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8128_low_2 (Length: 547)
Name: NF8128_low_2
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 6e-94; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 4150270 - 4150452
Alignment:
| Q |
1 |
gaacaataacaatctctcttctataaaacatgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagtt |
100 |
Q |
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| T |
4150270 |
gaacaataacaatctctcttctatcaaacatgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagtt |
4150369 |
T |
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| Q |
101 |
gagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgactattggtttaggaaaaacatag |
183 |
Q |
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| T |
4150370 |
gagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgactattggtttaggaaaaacatag |
4150452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 4166039 - 4166221
Alignment:
| Q |
1 |
gaacaataacaatctctcttctataaaacatgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagtt |
100 |
Q |
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| T |
4166039 |
gaacaataacaatctctcttctatcaaacatgtaaaaattgatgtagcagtcccgtcatatatcgaaaaatatcccttggttcttttcaactggctagtt |
4166138 |
T |
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| Q |
101 |
gagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtacttcagtgactattggtttaggaaaaacatag |
183 |
Q |
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| T |
4166139 |
gagctttctcgtatcgaatcattgacagtctcttcatctattcttgaggtacttcagtgactattggtttaggaaaaacatag |
4166221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 367 - 532
Target Start/End: Original strand, 4150693 - 4150858
Alignment:
| Q |
367 |
ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct |
466 |
Q |
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| T |
4150693 |
ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct |
4150792 |
T |
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| Q |
467 |
ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctg |
532 |
Q |
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| T |
4150793 |
ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctg |
4150858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 367 - 532
Target Start/End: Original strand, 4166462 - 4166627
Alignment:
| Q |
367 |
ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct |
466 |
Q |
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| T |
4166462 |
ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct |
4166561 |
T |
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| Q |
467 |
ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctg |
532 |
Q |
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| T |
4166562 |
ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctg |
4166627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 255 - 376
Target Start/End: Original strand, 4150524 - 4150645
Alignment:
| Q |
255 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
354 |
Q |
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| T |
4150524 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4150623 |
T |
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| Q |
355 |
caaaacttgaaattgctgaaaa |
376 |
Q |
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| T |
4150624 |
caaaacttgaaattgctgaaaa |
4150645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 255 - 376
Target Start/End: Original strand, 4166293 - 4166414
Alignment:
| Q |
255 |
aaaacatgacttgctttaaattgatcatgattcaccctccctcattgtatagactctttgcttagttcctggtttatggaaggttgatttcccttactta |
354 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4166293 |
aaaacatgacttgccttaaactgatcatgattcaccctccctcgttgcatagactctttgctcagttcctggtttatggaaggttgatttcccttactta |
4166392 |
T |
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| Q |
355 |
caaaacttgaaattgctgaaaa |
376 |
Q |
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| T |
4166393 |
caaaacttgaaattgctgaaaa |
4166414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 13490242 - 13490165
Alignment:
| Q |
77 |
ttggttcttttcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
154 |
Q |
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| T |
13490242 |
ttggttctgctcaactggctagttgagcttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactt |
13490165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 777486 - 777419
Alignment:
| Q |
87 |
tcaactggctagttgagctttctcgtatcgaatcattgacagtctcttcatctactcttgaggtactt |
154 |
Q |
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| T |
777486 |
tcaattggctagttgagcttgctaatatcgaatcactgacagtgtcttcaaatactcttgaggtactt |
777419 |
T |
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