View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8128_low_20 (Length: 213)
Name: NF8128_low_20
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 1242110 - 1242304
Alignment:
| Q |
7 |
agaagcagagagtgatgagtagtattatcaattgatagaactatgaatagtattatttgtttatctatcttcaattacatttgattaattagagagatta |
106 |
Q |
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| T |
1242110 |
agaagtagagagtgatgagtagtattatcaattgatagaactatgaatagtattatttgtttatctatcttcaattacatttgattaattagagagatta |
1242209 |
T |
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| Q |
107 |
gtgatgagttccattaaagtactattgctgcaatttatcaattcatgatagatgttactcnnnnnnnngcattgaaaatatgtaacaatgttcctg |
202 |
Q |
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| T |
1242210 |
gtgatgagttccattaaagtactattgctgcaatttatcaattcatgatagatgttactc-aaaaaaagcattgaaaatatgtaacaatgttcctg |
1242304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 1232660 - 1232745
Alignment:
| Q |
39 |
tgatagaactatgaatagtattatttgtttatctatcttcaattacatttgattaattagagagattagtgatgagttccattaaa |
124 |
Q |
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| T |
1232660 |
tgatagaattatgaatagtattatccattgatctatcttcaattacgcttttttaaacaaagagattagtggtgagttccattaaa |
1232745 |
T |
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