View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8128_low_22 (Length: 204)

Name: NF8128_low_22
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8128_low_22
NF8128_low_22
[»] chr7 (3 HSPs)
chr7 (16-107)||(27390628-27390720)
chr7 (82-164)||(27382151-27382232)
chr7 (16-73)||(27382057-27382114)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 27390628 - 27390720
Alignment:
Q  16 atgaaaatatcattatcaaaccaagttgtagagcacaattcatgtgtaacgtcctctt-nnnnnnnntcatgtgtaacataactattcatagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||    
T  27390628 atgaaaatatcattatcaaaccaagttgtagagcacaattcatgtgtaacgtccttttaaaaaaaactcatgtgtaacataactattcatagt 27390720  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 27382151 - 27382232
Alignment:
Q  82 tcatgtgtaacataactattcatagtttgttaagacatgaataacatcatatcaaataatttcatatctacttcaaaatatat 164  Q
    |||| ||||||||| ||||||||| | ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||    
T  27382151 tcatttgtaacatagctattcataatctgttaagacattaataacatcatatcatat-atttcatatctacttcaaaatatat 27382232  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 27382057 - 27382114
Alignment:
Q  16 atgaaaatatcattatcaaaccaagttgtagagcacaattcatgtgtaacgtcctctt 73  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  27382057 atgaaaatatcattatcaaaccaagttgtagagcacaactcatgtgtaacatcctctt 27382114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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