View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8128_low_3 (Length: 542)
Name: NF8128_low_3
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Original strand, 53127058 - 53127571
Alignment:
| Q |
19 |
atcaatcctcctgtaacgataagaaaaatacaaatgagttgtgcgtgccaaaatataatagattttataaccataattgatgactgacaagtttacactg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53127058 |
atcaatcctcctgtaacgataagaaaaatacaaatgagttgtgcgtgccaaaatataatagattttataaccataattgatgactgacaagtttacactg |
53127157 |
T |
|
| Q |
119 |
cacctgaagggtggagtgaagtctatttcgataggatccttgtcaactccatttgaatgatattggattttatagcttccatttgtaagctggtaaacaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53127158 |
cacctgaagggtggagtgaagtctatttcgataggatccttgtcaactccatttgaatgatattggattttatagcttccatttgtaagttggtaaacaa |
53127257 |
T |
|
| Q |
219 |
tacctaattgaaatttgccacgtattgagattaactacaagacatgaagaagataaaaacatgaagataaaatcaagtatagaaatcaatagtccttaat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53127258 |
tacctaattgaaatttgccacgtattgagattaactacatgacattaagaagataaaaacatgaagataaaatcaaatatagaaatcaatagtccttaat |
53127357 |
T |
|
| Q |
319 |
tcttaccgctcaacatttcctctgttatcttcatcaggtcatagtaatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53127358 |
tcttaccgctcaacatttcctctgttatcttcatcaggtcatagtaatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaa |
53127457 |
T |
|
| Q |
419 |
gtccataccctcatttctatattgtttaccgatttcataaacacgacccagcccaccaataaccagctgcttgagataaagttctggagcaattctcatg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53127458 |
gtccataccctcatttctatattgtttaccgatttcataaacacgacccagcccaccaataaccagctgcttgagataaagttctggagcaattctcatg |
53127557 |
T |
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| Q |
519 |
aataatttgatgtc |
532 |
Q |
| |
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|||||||| ||||| |
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| T |
53127558 |
aataatttcatgtc |
53127571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 53109234 - 53109720
Alignment:
| Q |
19 |
atcaatcctcctgtaacgataagaaaaatacaaatgagttgtgcgtgccaaaatataatagattttataaccataattgatgactgacaagtttacactg |
118 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||| | | ||||| || | ||| || ||||| || |||||||||||||||| ||||||||| |
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| T |
53109234 |
atcaatcctcctgtaacaataa---aaatacaaatgagt----cattccaaagtacattaggttgtataatcacaattgatgactgacaaatttacactg |
53109326 |
T |
|
| Q |
119 |
cacctgaagggtggagtgaagtctatttcgataggatccttgtcaactccatttgaatgatattggattttatagcttccatttgtaagctggtaaacaa |
218 |
Q |
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|||||||| |||||||||||||||||||| |||||||| || ||||| ||||||| |||||||| ||||||||||||||| ||||| || | || ||| | |
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| T |
53109327 |
cacctgaaaggtggagtgaagtctatttcaataggatctttatcaaccccatttgcatgatatttgattttatagcttccctttgtgagttcgtgaacca |
53109426 |
T |
|
| Q |
219 |
tacctaattgaaatttgccacgtattgagattaactacaagacatgaagaagataaaaacatgaagataaaatcaagtatagaaatcaatagtccttaat |
318 |
Q |
| |
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|||||| ||||||||||||| || ||||||||| ||| | | |||||||||||||| |||| | ||| ||||||||| ||||||| |
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| T |
53109427 |
tacctatttgaaatttgccatataatgagattaataacatggcctgaagaagataaaa--------------tcaaatgtagcaatcaatagaccttaat |
53109512 |
T |
|
| Q |
319 |
---tcttaccgctcaacatttcctctgttatcttcatcaggtcatagtaatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggt |
415 |
Q |
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||||||| |||||||||| |||||||||| ||| ||||||| || ||| ||| |||||| |||||||| | ||||||||||||||||| || |
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| T |
53109513 |
aattcttaccactcaacattttctctgttatccccattaggtcattatagtccatgtaagccatataaaactcacatgcagtgaactcaggattgtgtgt |
53109612 |
T |
|
| Q |
416 |
caagtccataccctcatttctatattgtttaccgatttcataaacacgacccagcccaccaataaccagctgcttgagataaagttctggagcaattctc |
515 |
Q |
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| T |
53109613 |
catgtctataccctcatttctaaattgtttaccaatttcataaacacgttccagcccaccaacaaccagctgcttgagataaagttctggagcaattctc |
53109712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 68 - 523
Target Start/End: Original strand, 53114701 - 53115142
Alignment:
| Q |
68 |
aaaatataatagattttataaccataattgatgactgacaagtttacactgcacctgaagggtggagtgaagtctatttcgataggatccttgtcaactc |
167 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||||| || ||||| | |
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| T |
53114701 |
aaaatataatagattttataatctcaattgatgagtgacaaatttagactgcacctgaagggtggagtgaagtctatttcaataggatctttatcaaccc |
53114800 |
T |
|
| Q |
168 |
catttgaatgatattggattttatagcttccatttgtaagctggtaaacaatacctaattgaaatttgccacgtattgagattaactacaagacatgaag |
267 |
Q |
| |
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|||||| |||||| | |||||||||||||||||||||||| | | ||| | ||||| |||||||||||||| | |||||||||| ||| ||||||| |
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| T |
53114801 |
catttgcatgatacttgattttatagcttccatttgtaagttcctgaaccaaacctatttgaaatttgccacatcatgagattaacaaca---catgaag |
53114897 |
T |
|
| Q |
268 |
aagataaaaacatgaagataaaatcaagtatagaaatcaatagtccttaat---tcttaccgctcaacatttcctctgttatcttcatcaggtcatagta |
364 |
Q |
| |
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|||||||| |||| ||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||| ||| ||||| | ||| |
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| T |
53114898 |
aagataaat--------------tcaaatatagcaatcaatagtccttaataattcttaccactcaacattctctctgttatctccattaggtcgttgta |
53114983 |
T |
|
| Q |
365 |
atccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaagtccataccctcatttctatattgtttaccgatttcataaacacga |
464 |
Q |
| |
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|| | ||| |||||| |||||||| || |||||||| ||||| || || | ||| ||| ||||||||||| |||||||||| |||||||||||||| |
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|
| T |
53114984 |
ttcattataagccatataaaactcacaggtagtgaactccggattatgtgtaaggtctatatcctcatttctaaattgtttaccaatttcataaacacgt |
53115083 |
T |
|
| Q |
465 |
cccagcccaccaataaccagctgcttgagataaagttctggagcaattctcatgaataa |
523 |
Q |
| |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53115084 |
tccatcccaccaacaaccagctgcttgagataaagttctggagcaattctcatgaataa |
53115142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 323 - 524
Target Start/End: Complemental strand, 15839637 - 15839436
Alignment:
| Q |
323 |
accgctcaacatttcctctgttatcttcatcaggtcatagtaatccgcaaaaggcatatagaactcacaagttgtgaactcaggattgtgggtcaagtcc |
422 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| | ||| ||||| ||| ||| ||||||||||||||| || || || |||||||| || ||||| || |
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|
| T |
15839637 |
accgctcaacatgttctctgttatctccattaagtcgtagtagtccttgtaagccatatagaactcacaggtagtaaattcaggattatgagtcaaatct |
15839538 |
T |
|
| Q |
423 |
ataccctcatttctatattgtttaccgatttcataaacacgacccagcccaccaataaccagctgcttgagataaagttctggagcaattctcatgaata |
522 |
Q |
| |
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|| |||||||| ||| |||||||||| |||||||||||||| ||| ||||||| ||||| || ||||||||| ||||||||||||||||||||||||| |
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| T |
15839537 |
atgccctcattcctaaattgtttaccaatttcataaacacggttcagaccaccaacaaccaacttcttgagatagagttctggagcaattctcatgaata |
15839438 |
T |
|
| Q |
523 |
at |
524 |
Q |
| |
|
|| |
|
|
| T |
15839437 |
at |
15839436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 15839837 - 15839749
Alignment:
| Q |
119 |
cacctgaagggtggagtgaagtctatttcgataggatccttgtcaactccatttgaatgatattggattttatagcttccatttgtaag |
207 |
Q |
| |
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|||||||| |||||||| ||||| ||||| |||||||||||||||| |||| || |||||| | |||||||||||| || |||||||| |
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|
| T |
15839837 |
cacctgaatggtggagtaaagtcgatttcaataggatccttgtcaagaccatctgcatgatacttgattttatagctgccttttgtaag |
15839749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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