View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8128_low_5 (Length: 486)
Name: NF8128_low_5
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 34813131 - 34813586
Alignment:
| Q |
18 |
aatatgtgttgtctcctcctcctggaaatacgtctgaaggaacgaatgcatcacaatttgttagttattattggtatactctataacaactaatttagaa |
117 |
Q |
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| T |
34813131 |
aatatgtgttgtctcctcctcttggaaatacgtctgaaggaacgaatgcatcacaatttgttagttattattggtatactctataacaactaatttagaa |
34813230 |
T |
|
| Q |
118 |
atatgaatgataaccaagtaatgatgaaacataccagatttctctgataagacaggaggagtatcttcatgtactggcatgttctctggcagctccttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34813231 |
atatgaatgataaccaagtaatgatgaaacataccagatttctctgataagacaggaggagtatcttcatgtactggcatgttctctggcagctccttgt |
34813330 |
T |
|
| Q |
218 |
ctaccggcagcacctgctctctcggagcattgaataggttgtctaacctaccatcaaattcttcaaaacccttcacatttgtagatttatcaggactgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34813331 |
ctaccggcagcacctgctctctcggagcattgaataggttgtctaacctaccatcaaattcttcaaaacccttcacatttgtagatttatcaggactgaa |
34813430 |
T |
|
| Q |
318 |
gttttatacttctaaaatatggaaaagaaaaccaaaagatggatgtaggagactaacatatctttcgaagccattattatgtactcctggaggtgatgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34813431 |
gttttatacttctaaaatatggaaaagaaaaccaaaagatggatgtaggagactaacatatctttcgaagccattattatgtactcctagaggtgatgtt |
34813530 |
T |
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| Q |
418 |
gatgatggttctggaggatggtctgatgaaattccaactgcatagaatactgatct |
473 |
Q |
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| T |
34813531 |
gatgatggttctggaggatggtctgatgaaattccaactgcatagaatactgatct |
34813586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 255 - 473
Target Start/End: Original strand, 35863796 - 35864019
Alignment:
| Q |
255 |
gttgtctaacctaccatc---aaattcttcaaaacccttcacatttgtagattt-atcaggactgaagtttt-atacttctaaaatatggaaaagaaaac |
349 |
Q |
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|||||||| ||||||||| |||||||||| ||||||||||||||| || ||| ||||||| | ||||||| || |||||||| ||||||||||||||| |
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| T |
35863796 |
gttgtctagcctaccatcgccaaattcttcagaacccttcacatttggagtttttatcaggaattaagtttttatccttctaaagtatggaaaagaaaac |
35863895 |
T |
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| Q |
350 |
caaaagatggatgtaggagactaacatatctttcgaagccattattatgtactcctggaggtgatgttgatgatggttctggaggatggtctgatgaaat |
449 |
Q |
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| T |
35863896 |
caaaagatggatgtaggagactaacatgtcctgtgaactcattattttgtactcctggaggtgatgtagatgatggttctggaggatggtctgctgaaat |
35863995 |
T |
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| Q |
450 |
tccaactgcatagaatactgatct |
473 |
Q |
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| T |
35863996 |
cctaactgcatagaatactgatct |
35864019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 35863574 - 35863706
Alignment:
| Q |
26 |
ttgtctcctcctcctggaaatacgtctgaaggaacgaatgcatcacaatttgttagttattattggtatactctataacaactaatttagaaatatgaat |
125 |
Q |
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||||| |||||||||||||||| |||| | |||| |||||| ||||||||||||||||| ||||||| || |||| |||||||||||||||| | |
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| T |
35863574 |
ttgtcccctcctcctggaaatatttctggctggacgactgcatccaaatttgttagttattataggtatacccttcgacaaataatttagaaatatgatt |
35863673 |
T |
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| Q |
126 |
g-----ataaccaagtaatgatgaaacatacca |
153 |
Q |
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| T |
35863674 |
gatcaaataaccaagtaaagatgaaacatacca |
35863706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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