View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8128_low_7 (Length: 406)
Name: NF8128_low_7
Description: NF8128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8128_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 3527569 - 3527944
Alignment:
| Q |
17 |
tgattcttgtcatcaatagcagtccagtctacaccaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattca |
116 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527569 |
tgattcttgtcatcaatagcagtcaagtcagcaccaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattca |
3527668 |
T |
|
| Q |
117 |
aattattcattacattagaacattttttgttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacactaa |
216 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3527669 |
aattattcattacattagcacattttttgttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacaccaa |
3527768 |
T |
|
| Q |
217 |
tttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttct |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527769 |
tttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttct |
3527868 |
T |
|
| Q |
317 |
ttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacctcttagttcat |
392 |
Q |
| |
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|||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
3527869 |
ttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttggacctcttagttcat |
3527944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 392
Target Start/End: Original strand, 3531996 - 3532371
Alignment:
| Q |
17 |
tgattcttgtcatcaatagcagtccagtctacaccaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattca |
116 |
Q |
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|||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |
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| T |
3531996 |
tgattcttgtcatccatatcagtcatgtctaaaccaaattcactcataaccaatggattagggttagaaccactcattagaaatccagccctatcattca |
3532095 |
T |
|
| Q |
117 |
aattattcattacattagaacattttttgttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacactaa |
216 |
Q |
| |
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| |||||||||||| | |||||||| ||||||||||| |||||| || | |||||||||||||||||||||||||||||||||||| || |
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| T |
3532096 |
atccattcattacattggcacatttttggttcaatggtttcacaatccaatcctttggtgacccagttgaccatgcataggaatgtacctcgtacaccaa |
3532195 |
T |
|
| Q |
217 |
tttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttct |
316 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
3532196 |
tttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcagtgtcatagttaaagccagaaacaaatactagaacatttggattttct |
3532295 |
T |
|
| Q |
317 |
ttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacctcttagttcat |
392 |
Q |
| |
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|||||||| ||||||||||||||||||||||| || |||||| || ||||||||||| ||||||||||||||||| |
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|
| T |
3532296 |
ttgtgaactgttgttgctccttggctcatgtacttctgccaattgtctatgttttgacctggacctcttagttcat |
3532371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 49 - 392
Target Start/End: Original strand, 3554900 - 3555243
Alignment:
| Q |
49 |
accaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacattagaacattttttgttc |
148 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3554900 |
accaaattcactcataaccaatggtttagggttagaaccactcatgagaaaccctgccttatcattcaaattattcattacattagcacattttttgttc |
3554999 |
T |
|
| Q |
149 |
aatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttg |
248 |
Q |
| |
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|||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||||| | | |||||||| |||| |
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| T |
3555000 |
aatggttgcttgtcccaatcacttcgttccccacttgaccatgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttg |
3555099 |
T |
|
| Q |
249 |
ttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgta |
348 |
Q |
| |
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| |||||||||||||||||| ||||||| || |||||||||||||| || ||||||| |||||| |||| ||||| ||||| ||||||||||||||||| |
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| T |
3555100 |
tcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggctcatgta |
3555199 |
T |
|
| Q |
349 |
tttttgccaactgcttatgttttgacttggacctcttagttcat |
392 |
Q |
| |
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|| |||||| || || |||||| |||||||||||||||||| |
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| T |
3555200 |
cttgtgccaattgttttcgttttgttttggacctcttagttcat |
3555243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 49 - 392
Target Start/End: Original strand, 3549309 - 3549656
Alignment:
| Q |
49 |
accaaattcactcataaccaatggattagggttagaaccactcattagaaaccctgccttatcattcaaattattcattacatta----gaacatttttt |
144 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| | ||||||||| |
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|
| T |
3549309 |
accaaattcagtcataaccaatggattagggttagaaccactcatgagaaaccctgccttgtcattcaatccattcattacattaattagcacatttttt |
3549408 |
T |
|
| Q |
145 |
gttcaatggttgtttgtcccaatcacttcgatccccagttgaccatgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagagga |
244 |
Q |
| |
|
|||| |||||| | |||||| || | ||| |||| ||||||||||||||||| || ||||| ||||||||||||||| | | |||||||| |
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| T |
3549409 |
attcactggttgctcaatccaatcttttggtgaccctattgatcatgcataggaatgtacttcatacaccaatttgtctcctatgttaacatttagaggc |
3549508 |
T |
|
| Q |
245 |
tttgttttcaagaagcttaaatcaatgtcatagttaaagccagaaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctca |
344 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| || |||||||||||||| || |||||||| |||||| ||||||| || |||||| |||||||||||| |
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| T |
3549509 |
tttgtcttcaagaagcttaaatcagtgtcataatttaagccagaaacaaaaactagaacatttggatttgctttgtggactgttgttactccttggctca |
3549608 |
T |
|
| Q |
345 |
tgtatttttgccaactgcttatgttttgacttggacctcttagttcat |
392 |
Q |
| |
|
||||||| | |||| || ||||||||| |||||||| |||||||| |
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|
| T |
3549609 |
tgtatttgtaccaattgtcattgttttgacctggacctcgtagttcat |
3549656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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