View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8129_high_10 (Length: 281)

Name: NF8129_high_10
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8129_high_10
NF8129_high_10
[»] chr7 (21 HSPs)
chr7 (12-262)||(12502786-12503036)
chr7 (12-262)||(12528416-12528666)
chr7 (21-262)||(36018070-36018311)
chr7 (12-262)||(11283082-11283332)
chr7 (12-263)||(21267909-21268159)
chr7 (12-176)||(26262894-26263058)
chr7 (16-261)||(48186354-48186599)
chr7 (12-261)||(16421772-16422021)
chr7 (12-262)||(28393109-28393359)
chr7 (12-262)||(28384193-28384443)
chr7 (12-221)||(16484125-16484331)
chr7 (48-129)||(48186291-48186373)
chr7 (48-129)||(11283023-11283105)
chr7 (48-125)||(16422002-16422080)
chr7 (48-129)||(26262835-26262917)
chr7 (48-170)||(12502727-12502847)
chr7 (48-170)||(12528357-12528477)
chr7 (48-129)||(16484308-16484390)
chr7 (48-129)||(28384420-28384502)
chr7 (48-98)||(21267558-21267609)
chr7 (48-129)||(28393336-28393418)
[»] chr1 (4 HSPs)
chr1 (12-262)||(18153518-18153768)
chr1 (12-261)||(18902088-18902337)
chr1 (48-170)||(18153707-18153827)
chr1 (48-129)||(18902314-18902396)
[»] chr8 (8 HSPs)
chr8 (15-262)||(5536789-5537036)
chr8 (21-231)||(6818698-6818910)
chr8 (12-261)||(44669005-44669255)
chr8 (12-220)||(3896995-3897202)
chr8 (48-129)||(44669232-44669314)
chr8 (48-170)||(5536727-5536847)
chr8 (48-129)||(6818896-6818978)
chr8 (48-129)||(3896936-3897018)
[»] chr4 (7 HSPs)
chr4 (12-261)||(28654131-28654380)
chr4 (12-262)||(52944961-52945214)
chr4 (12-261)||(15419043-15419293)
chr4 (12-260)||(15426061-15426310)
chr4 (48-129)||(15419270-15419352)
chr4 (48-129)||(15426287-15426369)
chr4 (63-126)||(28654087-28654151)
[»] chr3 (8 HSPs)
chr3 (12-262)||(11034617-11034867)
chr3 (11-262)||(3224860-3225111)
chr3 (12-261)||(19932857-19933106)
chr3 (12-237)||(1311625-1311849)
chr3 (51-129)||(11034561-11034640)
chr3 (48-129)||(19933083-19933165)
chr3 (51-129)||(1311826-1311905)
chr3 (48-129)||(3225087-3225170)
[»] chr6 (11 HSPs)
chr6 (12-261)||(3509957-3510206)
chr6 (12-262)||(15277964-15278215)
chr6 (12-261)||(24540766-24541016)
chr6 (12-136)||(21441845-21441969)
chr6 (48-129)||(3510183-3510265)
chr6 (48-129)||(24540993-24541075)
chr6 (51-129)||(34514392-34514471)
chr6 (21-83)||(34514457-34514519)
chr6 (48-115)||(34518338-34518406)
chr6 (12-86)||(34518397-34518471)
chr6 (50-129)||(15278192-15278272)
[»] scaffold0003 (2 HSPs)
scaffold0003 (12-261)||(10484-10733)
scaffold0003 (48-125)||(10714-10792)
[»] chr2 (4 HSPs)
chr2 (12-220)||(2039169-2039374)
chr2 (12-220)||(29962755-29962962)
chr2 (48-129)||(2039351-2039433)
chr2 (48-129)||(29962696-29962778)
[»] scaffold0172 (2 HSPs)
scaffold0172 (12-220)||(34344-34552)
scaffold0172 (48-129)||(34285-34367)
[»] scaffold0655 (2 HSPs)
scaffold0655 (12-237)||(7698-7923)
scaffold0655 (48-115)||(7914-7981)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 12502786 - 12503036
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12502786 attattctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 12502885  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttaga 211  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12502886 ctgagtcatctaatgcatgaatgtctccgtaaatacctcaccattgagtaacaactccttaaatctaagtctagtattccaccgttggatatagtttaga 12502985  T
Q  212 atcaccatttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  12502986 atcaccatttagttacttaaggttatgcatccataaacaaagagtatttat 12503036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 12528416 - 12528666
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  12528416 attattctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcggtaccccactgttgggcattttt 12528515  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttaga 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12528516 ctaagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttaga 12528615  T
Q  212 atcaccatttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  12528616 atcaccatttagttacttaaggttatgcatccataaacaaagattatttat 12528666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 36018311 - 36018070
Alignment:
Q  21 aatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatttttctgagtcat 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  36018311 aatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccgttggacatttgtctgagtcat 36018212  T
Q  121 ctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttagaatcaccatt 220  Q
    |||||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||    
T  36018211 ctaatgcatgaatgtctctgtaaataccccaccattgaataataactccttaaatctaagtctagtataccacctttggatatagtctagaattaccatt 36018112  T
Q  221 taattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    || ||| ||||||||||||||| |||||||||||||||||||    
T  36018111 tagttagttaaggttatgcatccataaacaaagagtatttat 36018070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 11283082 - 11283332
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||| |||| |    
T  11283082 attattctgaatcatctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcgatgtttagtaccccaccgtagggtatttgt 11283181  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||||||| | |    
T  11283182 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaataactccttaattctaaatctagtatcccaccattggatatagttaaaa 11283281  T
Q  212 atcaccatttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    |||||||||||  ||||||||||||| |||| |||||||||||||||||||    
T  11283282 atcaccatttagctacttaaggttattcatccataaacaaagagtatttat 11283332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 21267909 - 21268159
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| || ||||||||||||||| |    
T  21267909 attattctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtagtaactcctaaaactcgatggtcagtgccacaccgttgggcatttgt 21268008  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||   ||||||| |||||  ||||||| ||||||||| ||||||||||||| |    
T  21268009 ctgagtcatctaatgcatgaatatctccgtaaataccccaccgttgggt---aactcctaaaatcaaaagtctaatatcccaccattggatatagttttg 21268105  T
Q  211 aatcacca-tttaattacttaaggttatgcatcgataaacaaagagtatttata 263  Q
    |||||||| |||| |||||||||||||| || | ||||||||| | ||||||||    
T  21268106 aatcaccattttagttacttaaggttattcacccataaacaaataatatttata 21268159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 26262894 - 26263058
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  26262894 attattttgaatcatctaatgcatatgaatcgtcactatcccaccattgggtaataactcctaaaactcgatgttcagtaccccagcgttgggcatttgt 26262993  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc 176  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  26262994 ctgagtcatctaatgcatgaatgtctcggtaaataccccaccattgggtaataactccttaaatc 26263058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 48186354 - 48186599
Alignment:
Q  16 ttctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatttttctga 115  Q
    |||| |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||| ||||||| |||||||||| |||||    
T  48186354 ttctgaatcatctaatgcatatgaatcgtcactacaccaccattgggtagtaactcctaaaactcgatggtcagtgccccaccattgggcatttgtctga 48186453  T
Q  116 gtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttagaatc 214  Q
    |||||||||||||||||| ||||||||||||||||||| |||| ||  ||||||| |||||  ||||||| || |||||| ||||||||||||| |||||    
T  48186454 gtcatctaatgcatgaatatctccgtaaataccccaccgttggata--aactcctaaaatcaaaagtctaataccccaccattggatatagttttgaatc 48186551  T
Q  215 acca-tttaattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    |||| |||| |||||||||||||| || | ||||||||| ||||||||    
T  48186552 accattttagttacttaaggttattcacccataaacaaatagtattta 48186599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 16422021 - 16421772
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||| ||||||||||| ||||| |||||| || |||| ||||||||||||||||||| ||||| ||||||| |||| ||||| |    
T  16422021 attattctgaatcacctaattcatatgaatcgccactatcccaccgttgggtagtaactcctaaaactcgatggtcagtgccccaccattggacatttgt 16421922  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||  |||||  ||||||| ||||||||| ||||||||||||| |    
T  16421921 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggta--atctccaaaaatcaaaagtctaatatcccacctttggatatagttttg 16421824  T
Q  211 aatcacca-tttaattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    |||||||| |||| ||||||||| |||| || | ||||||||| ||||||||    
T  16421823 aatcaccattttagttacttaagtttattcacccataaacaaatagtattta 16421772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 28393359 - 28393109
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||| | |||||||||||||||||||||||  ||||||||||| || |||||||||||||||||||||||| ||||| ||||||| |||||||||| |    
T  28393359 attattatgaatcatctaatgcatatgaatcgctactaccccaccgttgggtaataactcctaaaactcgatggtcagtgccccaccattgggcatttat 28393260  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
     |||||||||||||||||||| |||||||||||||||||||| |||||||  | ||| | |||||  |||| |||||||||||| ||||||||||||| |    
T  28393259 ttgagtcatctaatgcatgaaagtctccgtaaataccccaccgttgggta--atctcataaaatcaaaagtttagtatcccacctttggatatagttttg 28393162  T
Q  211 aatcacca-tttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    |||||| | |||| ||  ||||||||||  | | ||||||||| |||||||||    
T  28393161 aatcacaattttagttgtttaaggttatttacccataaacaaatagtatttat 28393109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 28384443 - 28384193
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||| |||||||||||||||||||  || ||||||||  | |||||||| ||||||||||||||| ||||| ||||||| |||||||||| |    
T  28384443 attattctgaatgatctaatgcatatgaatcgctaccaccccaccgctgggtaataaatcctaaaactcgatggtcagtgccccaccattgggcatttgt 28384344  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    ||||||||||||||||||||| || ||||||||||| ||||| |||||||  |  |||| |||||  |||| |||||||||||| ||||||||||||| |    
T  28384343 ctgagtcatctaatgcatgaaagtatccgtaaatactccaccgttgggta--atttcctaaaatcaaaagtttagtatcccacctttggatatagttttg 28384246  T
Q  211 aatcacca-tttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    ||| |||| |||| || |||||||||||  ||| ||||||||| |||||||||    
T  28384245 aattaccattttagttgcttaaggttatttatccataaacaaatagtatttat 28384193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 16484331 - 16484125
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||| ||||||||||||| ||||||| |||| || |||| |||||||||||||||| || ||||| ||||||| |||||||||| |    
T  16484331 attattctgaatcacctagtgcatatgaatcgccactacctcaccgttgggtagtaactcctaaaactcggtgatcagtgccccaccattgggcatttgt 16484232  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||  | ||||| |||||  ||||||| ||||||| | ||||||||||||| |    
T  16484231 ctgagtcatctaatgcatgaatgtctccgtaaataccccacc--ggggta--atctcctaaaatcaaaagtctaatatcccatctttggatatagttttg 16484136  T
Q  211 aatcaccattt 221  Q
    |||| ||||||    
T  16484135 aatcgccattt 16484125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 48186291 - 48186373
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  48186291 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccatcattgggcatttttctgaatcatctaatgcat 48186373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 11283023 - 11283105
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||| ||||||| | ||||||||||||||||||| |||| |||| |||||| |||||||||||||    
T  11283023 taccccaccattgggtaataacacctaaaaattcgatgttcagtaccccaccattggacattattctgaatcatctaatgcat 11283105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 16422080 - 16422002
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaat 125  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||| ||| |||||    
T  16422080 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcattattctgaatcacctaat 16422002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 26262835 - 26262917
Alignment:
Q  48 taccccaccattaggtaataactcctaaaactcg-atgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | | ||||||||||||||||| ||||||||| || ||| |||||||||||||    
T  26262835 taccccaccattgggtaataactcctaaaaattggatgttcagtaccccaccattgggcattattttgaatcatctaatgcat 26262917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 12502727 - 12502847
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcatgaatgtctccgtaaata 146  Q
    |||||||| ||| || |||||||||||||| | ||||||||| ||||||||| |||| |||| |||||| |||||||||||||  |||  | ||| | ||    
T  12502727 taccccactattgggaaataactcctaaaaattcgatgttcaataccccaccattggacattattctgaatcatctaatgcat--atgaat-cgtcacta 12502823  T
Q  147 ccccaccattgggtaacaactcct 170  Q
    |||||||||||||||| |||||||    
T  12502824 ccccaccattgggtaataactcct 12502847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 12528357 - 12528477
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcatgaatgtctccgtaaata 146  Q
    |||||||||||| | ||||||||||||||| | | || |||||||||||||| |||| |||| |||||| |||||||||||||  |||  | ||| | ||    
T  12528357 taccccaccattggataataactcctaaaaattcaattttcagtaccccaccattggacattattctgaatcatctaatgcat--atgaat-cgtcacta 12528453  T
Q  147 ccccaccattgggtaacaactcct 170  Q
    |||||||||||||||| |||||||    
T  12528454 ccccaccattgggtaataactcct 12528477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 16484390 - 16484308
Alignment:
Q  48 taccccaccattaggtaataactcctaaaactc-gatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| |  || ||||||||||||||| ||||||||| |||||| ||| ||| |||||    
T  16484390 taccccaccattgggtaataactcctaaaaatttgaagttcagtaccccaccattgggcattattctgaatcacctagtgcat 16484308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 28384502 - 28384420
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    ||||||| |||| || |||| ||||||||| | ||||||||||||||||||| ||||||||| |||||| | |||||||||||    
T  28384502 taccccaacattgggcaatacctcctaaaaattcgatgttcagtaccccaccattgggcattattctgaatgatctaatgcat 28384420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 21267558 - 21267609
Alignment:
Q  48 taccccaccattaggtaataactcct-aaaactcgatgttcagtaccccacc 98  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  21267558 taccccaccattcggtaataactcctaaaaattcgatgttcagtaccccacc 21267609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 28393418 - 28393336
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| | |||||| |||||||| | |||||||| |||||||||| ||||  ||| || ||| |||||||||||||    
T  28393418 taccccaccattggataataaatcctaaaaattcgatgttcggtaccccaccattggaaattattatgaatcatctaatgcat 28393336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 18153768 - 18153518
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18153768 attattctgaatcatctaatgcatatgaatcgtcattaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatttgt 18153669  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttaga 211  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18153668 ctgagtcatctaatgcatgattgtctccgtaaataccccaccattgggtaataactccttaaatctaagtctagtatcccaccattggatatagtttaga 18153569  T
Q  212 atcaccatttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  18153568 atcaccatttagttacttaaggttatgcatccataaacaaagagtatttat 18153518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 18902337 - 18902088
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||| | |||||||||||| || |||| ||||||||||||||||||| | ||||||||||| |||||||||| |    
T  18902337 attattctgaatcacctaatgcatatgaattgccactaccccaccgttcggtagtaactcctaaaactcgatggtaagtaccccaccattgggcatttgt 18902238  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||  | ||||| |||||  ||||||| ||| ||||| ||||||||||||| |    
T  18902237 ctgagtcatctaatgcatgaatgtctccgtaaatactccatcgttgggta--atctcctaaaatcaaaagtctaatataccacctttggatatagttttg 18902140  T
Q  211 aatcacca-tttaattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    |||||||| |||| |||||||| ||||| || | ||||||||| ||||||||    
T  18902139 aatcaccattttagttacttaaagttattcacccataaacaaatagtattta 18902088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 18153827 - 18153707
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcatgaatgtctccgtaaata 146  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||| |||||||||||||  |||  | ||| | ||    
T  18153827 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcattattctgaatcatctaatgcat--atgaat-cgtcatta 18153731  T
Q  147 ccccaccattgggtaacaactcct 170  Q
    |||||||||||||||| |||||||    
T  18153730 ccccaccattgggtaataactcct 18153707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 18902396 - 18902314
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  18902396 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcattattctgaatcacctaatgcat 18902314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 5536789 - 5537036
Alignment:
Q  15 attctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatttttctg 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  5536789 attctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccattgggcatttgtctg 5536888  T
Q  115 agtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttagaatc 214  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  5536889 agtcatctaatgcatgaatgtctccgtaaatacctcaccattggataataactccttaaatctaggtctagtatcccagcgttggatatagtttagaatc 5536988  T
Q  215 accatttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5536989 accatttagttacttaaggttatgcatccataaacaaagagtatttat 5537036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 6818910 - 6818698
Alignment:
Q  21 aatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatttttctgagtcat 120  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||| |||   ||||||||||    
T  6818910 aatcacctaatgcatatgaatcgtcactaccccatcattgggtaataactcctaaaactcgatgttcggtaccccaccattggacatcagtctgagtcat 6818811  T
Q  121 ctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatct-aagtctagtatcccaccgttggatatagtttagaatcacc-a 218  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||||| || ||| ||||||||||||||||| |||||||||||||  ||||||| |    
T  6818810 ctaatgcataaatgtctccataaataccccaccattgggtaataactcctcaactctaaagtctagtatcccacctttggatatagttttaaatcaccaa 6818711  T
Q  219 tttaattacttaa 231  Q
    |||| ||||||||    
T  6818710 tttagttacttaa 6818698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 44669255 - 44669005
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||| |||||||||| |    
T  44669255 attattctgaatcatcaaatgcatatgaatcgccactaccccaccattgggtagtaactcctaaaactcgatggtcagtgccccaccattgggcatttgt 44669156  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactcc-ttaaatc-taagtctagtatcccaccgttggatatagttta 209  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||  | ||||   |||||  ||||||| ||||||||| ||||||||| |||     
T  44669155 ctgagtcatctaatgcatgaatgtctccgtaaatacccctccgttgggta--atctccaaaaaatcaaaagtctaatatcccacctttggatataatttt 44669058  T
Q  210 gaatcacca-tttaattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    ||||||||| |||| ||| |||||||||| || | ||||||||| ||||||||    
T  44669057 gaatcaccattttagttagttaaggttattcacccataaacaaatagtattta 44669005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 3896995 - 3897202
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| |||||  |||||||||||||| | |||||||||||| || |||| |||||  |||||||||||  ||| |  |||||| |||||||| | |    
T  3896995 attattctgaatcacgtaatgcatatgaattgccactaccccaccgttgggtagtaacttttaaaactcgattgtcaatgtcccaccattgggcatctgt 3897094  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||||||  | ||||| |||||  |||||||||||| |||| ||||||||||||| |    
T  3897095 ctgagtcatctaatgcatgaatgtctccttaaataccccactgttgggta--atctcctaaaatcaaaagtctagtatctcacctttggatatagttttg 3897192  T
Q  211 aatcaccatt 220  Q
    ||||||||||    
T  3897193 aatcaccatt 3897202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 44669314 - 44669232
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||| |||| |||||| ||||| |||||||    
T  44669314 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattggacattattctgaatcatcaaatgcat 44669232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 5536727 - 5536847
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcatgaatgtctccgtaaata 146  Q
    |||||||||||| | ||||||||||||||| | |||||||||| |||||||| ||||||||  |||||| |||||||||||||  |||  | ||| | ||    
T  5536727 taccccaccattggataataactcctaaaaattcgatgttcaggaccccaccattgggcatcattctgaatcatctaatgcat--atgaat-cgtcacta 5536823  T
Q  147 ccccaccattgggtaacaactcct 170  Q
    |||||||||||||||| |||||||    
T  5536824 ccccaccattgggtaataactcct 5536847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 6818978 - 6818896
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    ||||||||| || ||||||||||||||||| | |||| ||||||||||||| ||||||| || || ||| ||| |||||||||    
T  6818978 taccccacccttgggtaataactcctaaaaattcgatcttcagtaccccactgttgggctttattttgaatcacctaatgcat 6818896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 3896936 - 3897018
Alignment:
Q  48 taccccaccattaggtaataactcct-aaaactcgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||| |||| ||||||||  |||||||||| || | |||| |||||| |||  ||||||||    
T  3896936 taccccaccattgggtaataactcctaaaaattcgatgtttggtaccccaccattagacattattctgaatcacgtaatgcat 3897018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 28654131 - 28654380
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||| | |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| |    
T  28654131 attattttgaatcatctaatgtatatgaatcgtcactaccctaccattgggtaataactcctaaaactcgatgttcagtacctcaccgttggacatttgt 28654230  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28654231 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaataactccttaaatctaagtctagtatcccatcgttggatatagtttaga 28654330  T
Q  212 atcaccatttaattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  28654331 atcaccatttagttacttaaggttatgcatccataaacaaagagtattta 28654380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 52945214 - 52944961
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtacccc-accgttgggcatttt 110  Q
    |||||||| ||||| |||||||||||||||||| || |||||||  || |||||| |||||||||||| ||||||||||||||| ||| ||||||||||     
T  52945214 attattctgaatcacctaatgcatatgaatcgttaccaccccactgttgggtaatgactcctaaaacttgatgttcagtacccccaccattgggcatttg 52945115  T
Q  111 tctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaa-gtctagtatcccaccgttggatatagttta 209  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||  |||||||    ||||| ||||||||||||||| ||||||||||| |     
T  52945114 tctgagtcatctaatgcatgaatatctccataaataccccaccattgggtactaactcctcgcctctaaggtctagtatcccacctttggatatagtgtt 52945015  T
Q  210 gaatcacca-tttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    ||||||||| |||| ||||| ||| |||| || | ||||||||| |||||||||    
T  52945014 gaatcaccattttagttactcaagattattcacccataaacaaatagtatttat 52944961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 15419293 - 15419043
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||| || |||| |||||| ||||| |||||| ||||| ||||||| |||||||||| |    
T  15419293 attattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcttaaaaatcgatggtcagtgccccaccattgggcatttgt 15419194  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactcc-ttaaatc-taagtctagtatcccaccgttggatatagttta 209  Q
     |||||||||||||||||||| |||||  ||||||||||||| |||||||  | ||||   |||||  ||||||| ||||||||| |||||||||||||     
T  15419193 gtgagtcatctaatgcatgaaagtctctttaaataccccaccgttgggta--atctccaaaaaatcaaaagtctaatatcccacctttggatatagtttt 15419096  T
Q  210 gaatcaccattt-aattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    ||||| |||||| | |||||||||||||| |||| ||||||||||| ||||||    
T  15419095 gaatcgccatttcagttacttaaggttattcatccataaacaaagattattta 15419043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 15426310 - 15426061
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||| || |||| ||| ||||||||||||||| ||||| ||||||| |||||||||| |    
T  15426310 attattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaattcctaaaactcgatggtcagtgccccaccattgggcatttgt 15426211  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactcc-ttaaatc-taagtctagtatcccaccgttggatatagttta 209  Q
     |||||||||||||||||||| |||||  ||||||||||||| |||||||  | ||||   |||||  ||||||| ||||||||| |||||||||||||     
T  15426210 gtgagtcatctaatgcatgaaagtctctttaaataccccaccgttgggta--atctccaaaaaatcaaaagtctaatatcccacctttggatatagtttt 15426113  T
Q  210 gaatcaccattt-aattacttaaggttatgcatcgataaacaaagagtattt 260  Q
    ||||| |||||| | |||||||||||||| || | ||||||||||| |||||    
T  15426112 gaatcgccatttcagttacttaaggttattcacccataaacaaagattattt 15426061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 15419352 - 15419270
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | || |||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  15419352 taccccaccattgggtaataactcctaaaaattcggtgttcagtaccccaccattgggcattattctgaatcacctaatgcat 15419270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 15426369 - 15426287
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | || |||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  15426369 taccccaccattgggtaataactcctaaaaattcggtgttcagtaccccaccattgggcattattctgaatcacctaatgcat 15426287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 28654087 - 28654151
Alignment:
Q  63 taataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatg 126  Q
    ||||||||||||||| | ||||||||||||||||||| |||| |||| || ||| ||||||||||    
T  28654087 taataactcctaaaaattcgatgttcagtaccccaccattggacattattttgaatcatctaatg 28654151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 11034617 - 11034867
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11034617 attattctgaatcatttaatgcatatgaattgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatttgt 11034716  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttaga 211  Q
    |||||||||||||| |||||||||||| |||||| ||||| |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  11034717 ctgagtcatctaatacatgaatgtctctgtaaatgccccatcattaggtaataactccttaaatctaagtttagtatcccaccgttggatatagtttaga 11034816  T
Q  212 atcaccatttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  11034817 atcaccatttagttacgtaaggttatgcatccataaacaaagagtatttat 11034867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 3225111 - 3224860
Alignment:
Q  11 tattattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatttt 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |||| || ||||||||||     
T  3225111 tattattctgaatcatctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcgatggtcagtgccccgccattgggcatttg 3225012  T
Q  111 tctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagttta 209  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| |||  | ||||| |||||  ||||||||||||||||| |||||||||||||     
T  3225011 tctgagtcatctaatgcatgagtgtctccgtaaataccccaccgttgagta--atctcctaaaatcaaaagtctagtatcccacctttggatatagtttt 3224914  T
Q  210 gaatcacca-tttaattacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    ||||||||| |||| |||||||||||||| || | ||||||||| | |||||||    
T  3224913 gaatcaccattttagttacttaaggttattcacccataaacaaataatatttat 3224860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 19933106 - 19932857
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||| | |||||||||||| ||  ||| ||||||||||||||||||| ||||||||||||| |||||||||| |    
T  19933106 attattctgaatcacctaatgcatatgaattgccactaccccaccgttgagtagtaactcctaaaactcgatggtcagtaccccaccattgggcatttgt 19933007  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||| |||||  ||||||| ||||||||| ||||||||||||| |    
T  19933006 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggta--atctcctaaaatcaaaagtctaatatcccacctttggatatagttttg 19932909  T
Q  211 aatcacca-tttaattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    |||||||| |||| |||||||| ||||| || | ||||||||| ||||||||    
T  19932908 aatcaccattttagttacttaaagttattcacccataaacaaatagtattta 19932857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 1311849 - 1311625
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||| ||| | ||||||| |||||||||| |    
T  1311849 attattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcgatgatcaatgccccaccattgggcatttgt 1311750  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||  | ||||  |||||  ||||||| ||||||||| ||||||||||||| |    
T  1311749 ctgagtcatctaatgcatgaatgtctctgtaaataccccacc-ttgggta--atctccaaaaatcaaaagtctaatatcccacctttggatatagttttg 1311653  T
Q  211 aatcacca-tttaattacttaaggttat 237  Q
    ||||| || |||| ||||||||||||||    
T  1311652 aatcatcattttagttacttaaggttat 1311625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 11034561 - 11034640
Alignment:
Q  51 cccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    ||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||| |||| ||||||||    
T  11034561 cccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcattattctgaatcatttaatgcat 11034640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 19933165 - 19933083
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | |||||||||||| |||||| ||||||||| |||||| ||| |||||||||    
T  19933165 taccccaccattgggtaataactcctaaaaattcgatgttcagtatcccaccattgggcattattctgaatcacctaatgcat 19933083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 1311905 - 1311826
Alignment:
Q  51 cccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    ||||||||| ||||||||| ||||||| | ||||||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  1311905 cccaccattgggtaataacccctaaaaattcgatgttcagtaccccaccattgggcattattctgaatcacctaatgcat 1311826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 3225170 - 3225087
Alignment:
Q  48 taccccaccattaggtaataactcct-aaaactcgatgttcagta-ccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||| |||| | |||||| |||| |||||||| |||| ||| |||||| |||||||||||||    
T  3225170 taccccaccattgggtaataactcctaaaaatttgatgtttagtacccccaccgatgggtattattctgaatcatctaatgcat 3225087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 3510206 - 3509957
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||| ||||||||||||| |||||||||| |    
T  3510206 attattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcgatggtcagtaccccaccattgggcatttgt 3510107  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||  |||||  ||||||| ||||||||| ||||||||||||| |    
T  3510106 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggta--atctccaaaaatcaaaagtctaatatcccacctttggatatagttttg 3510009  T
Q  211 aatcacca-tttaattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    |||||||| |||| ||||||||| |||| || | ||||||||| ||||||||    
T  3510008 aatcaccattttagttacttaagtttattcacccataaacaaatagtattta 3509957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 15278215 - 15277964
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttc-agtaccccaccgttgggcatttt 110  Q
    ||||| || ||||| ||||||||||||||||| |||||||||||| || |||||||||||  |||||||||| | | ||| ||| ||| ||||||||||     
T  15278215 attatactgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaataactcacaaaactcgatttgccagtgccctaccattgggcatttg 15278116  T
Q  111 tctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaa-tctaagtctagtatcccaccgttggatatagttta 209  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |||||||  | ||||| ||| |  ||||||||||||||||| |||||||||||||     
T  15278115 tctaagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggta--atctcctaaaattaaaagtctagtatcccacctttggatatagtttt 15278018  T
Q  210 gaatcaccatttaa-ttacttaaggttatgcatcgataaacaaagagtatttat 262  Q
    |||||||||||||| || ||||||||||| || | ||||||||| |||||||||    
T  15278017 gaatcaccatttaagttgcttaaggttattcacccataaacaaatagtatttat 15277964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 24541016 - 24540766
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||| || |||| ||| || ||||| |||||| ||||| ||||||| |||||||||| |    
T  24541016 attattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaaatcataaaaatcgatggtcagtgccccaccattgggcatttgt 24540917  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactcc-ttaaatc-taagtctagtatcccaccgttggatatagttta 209  Q
    ||||||||||||||||||||| |||||   |||||||||||| |||||||  | ||||   |||||  ||||||| ||||||||| |||||||||||||     
T  24540916 ctgagtcatctaatgcatgaaagtctcttaaaataccccaccgttgggta--atctccaaaaaatcaaaagtctaatatcccacctttggatatagtttt 24540819  T
Q  210 gaatcaccattt-aattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    ||||| |||||| | |||||||||||||| || | ||||||||||| ||||||    
T  24540818 gaatcgccatttcagttacttaaggttattcaaccataaacaaagattattta 24540766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 21441969 - 21441845
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||| | ||||| |||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||| ||||||||| || ||||||| |    
T  21441969 attattttgaatcacctaatgcatatgaatcgtcaataccccactattggataataactcctaaaactcgatgttcaataccccaccattaggcatttgt 21441870  T
Q  112 ctgagtcatctaatgcatgaatgtc 136  Q
    |  |||| ||| ||||| |||||||    
T  21441869 ccaagtcctcttatgcacgaatgtc 21441845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 3510265 - 3510183
Alignment:
Q  48 taccccaccattaggtaataactcctaaaactc-gatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| |  |||||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  3510265 taccccaccattgggtaataactcctaaaaatttgatgttcagtaccccaccattgggcattattctgaatcacctaatgcat 3510183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 24541075 - 24540993
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | || |||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  24541075 taccccaccattgggtaataactcctaaaaattcggtgttcagtaccccaccattgggcattattctgaatcacctaatgcat 24540993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 34514392 - 34514471
Alignment:
Q  51 cccaccattaggtaataactcctaaaactc-gatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    ||||||||||||||||||||||||||| |  |||||||||||| ||||| |||||||||| ||||| ||||| |||||||    
T  34514392 cccaccattaggtaataactcctaaaaatttgatgttcagtactccaccattgggcatttctctgaatcatccaatgcat 34514471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 34514457 - 34514519
Alignment:
Q  21 aatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgat 83  Q
    ||||||| ||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||    
T  34514457 aatcatccaatgcatatgaatggtcactaccctaccattgggtagtaactcctaaaactcgat 34514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 34518338 - 34518406
Alignment:
Q  48 taccccaccattaggtaataactcct-aaaactcgatgttcagtaccccaccgttgggcatttttctga 115  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||| |||| ||||||    
T  34518338 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattggacattattctga 34518406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 34518397 - 34518471
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgtt 86  Q
    |||||||| ||| ||| |||| ||||||||||||||||||| |||||| || | ||||||||||||||| |||||    
T  34518397 attattctgaattatccaatgtatatgaatcgtcactaccctaccattgggcagtaactcctaaaactcaatgtt 34518471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 15278272 - 15278192
Alignment:
Q  50 ccccaccattaggtaataactcctaaaactc-gatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||| |||||||| |||||||| |  |||||||||||| ||||| ||||||||| | |||| ||| |||||||||    
T  15278272 ccccaccattgggtaataaatcctaaaaatttgatgttcagtactccaccattgggcattatactgaatcacctaatgcat 15278192  T

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Target: scaffold0003 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 10733 - 10484
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||| ||||||||||| ||||| |||||| || |||| ||||||||||||||||||| ||||| ||||||| |||| ||||| |    
T  10733 attattctgaatcacctaattcatatgaatcgccactatcccaccgttgggtagtaactcctaaaactcgatggtcagtgccccaccattggacatttgt 10634  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||  |||||  ||||||| ||||||||| ||||||||||||| |    
T  10633 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggta--atctccaaaaatcaaaagtctaatatcccacctttggatatagttttg 10536  T
Q  211 aatcacca-tttaattacttaaggttatgcatcgataaacaaagagtattta 261  Q
    |||||||| |||| ||||||||| |||| || | ||||||||| ||||||||    
T  10535 aatcaccattttagttacttaagtttattcacccataaacaaatagtattta 10484  T

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Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 10792 - 10714
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaat 125  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||| ||| |||||    
T  10792 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcattattctgaatcacctaat 10714  T

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Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 2039374 - 2039169
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||| || |||| ||||||||||||||| ||  |||||  |||||| |||||||||| |    
T  2039374 attattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcaatagtcagtgtcccaccattgggcatttgt 2039275  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatctaagtctagtatcccaccgttggatatagtttaga 211  Q
    |||||||| ||||||||||||||||||| ||||||||||||| |||||||  | ||||| |||| ||| |||||||||||||| ||||||||||||| ||    
T  2039274 ctgagtcaactaatgcatgaatgtctccttaaataccccaccgttgggta--atctcctaaaat-taaatctagtatcccacctttggatatagttttga 2039178  T
Q  212 atcaccatt 220  Q
    |||||||||    
T  2039177 atcaccatt 2039169  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 29962755 - 29962962
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||| || |||| |||||||||||| || ||| ||||| ||| ||| |||||||||| |    
T  29962755 attattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaattcaatggtcagtgccctaccattgggcatttgt 29962854  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatc-taagtctagtatcccaccgttggatatagtttag 210  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||  | ||| | ||| |  ||||||||||||||||| ||||||||||||| |    
T  29962855 ctgagtcatctaatgcatgaatgtctccttaaataccccaccgttgggta--atctcataaaaacaaaagtctagtatcccacctttggatatagttttg 29962952  T
Q  211 aatcaccatt 220  Q
    ||||||||||    
T  29962953 aatcaccatt 29962962  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 2039433 - 2039351
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||||| || |||||| |||||| ||| |||||||||    
T  2039433 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccatttggcattattctgaatcacctaatgcat 2039351  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 29962696 - 29962778
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    ||||| |||||| | ||||||||||||||| | ||||||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  29962696 tacccgaccattggataataactcctaaaaattcgatgttcagtaccccaccattgggcattattctgaatcacctaatgcat 29962778  T

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Target: scaffold0172 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 34344 - 34552
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| ||||| ||||||||||||||||| |||||||| ||| || |||| ||||||||||||||||||| ||||| ||||| | ||| |||||| |    
T  34344 attattctgaatcacctaatgcatatgaatcgccactacccgaccgttgggtagtaactcctaaaactcgatggtcagtgccccatcattgcgcatttgt 34443  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactcctt--aaatctaagtctagtatcccaccgttggatatagttta 209  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| ||  | ||||||  |||   ||||||||||||||||| |||||||||||||     
T  34444 ctgagtcatctaatgcatgaatgtctccttaaataccccaccgttggata--atctccttaaaaacaaaagtctagtatcccacctttggatatagtttt 34541  T
Q  210 gaatcaccatt 220  Q
    |||||||||||    
T  34542 gaatcaccatt 34552  T

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Target: scaffold0172; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 34285 - 34367
Alignment:
Q  48 taccccaccattaggtaataactcctaaaact-cgatgttcagtaccccaccgttgggcatttttctgagtcatctaatgcat 129  Q
    |||||||||||| | ||||||||||||||| | |||||||||||| |||||| ||||||||| |||||| ||| |||||||||    
T  34285 taccccaccattggataataactcctaaaaattcgatgttcagtatcccaccattgggcattattctgaatcacctaatgcat 34367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 7923 - 7698
Alignment:
Q  12 attattctaaatcatctaatgcatatgaatcgtcactaccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcattttt 111  Q
    |||||||| || || |||||| | |||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  7923 attattctgaaacacctaatgaaaatgaattgtcactaccctagcattgggtaataactcctaaaactcgatgttcagtaccccaccattgggcatttgt 7824  T
Q  112 ctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatct-aagtctagtatcccaccgttggatatagtttag 210  Q
     ||||||||||||||||||| | ||||| |||||||||||||||||  ||  | ||| | |||| | || |||||||||||||| || |||||||||| |    
T  7823 ttgagtcatctaatgcatgactatctccataaataccccaccattgacta--atctcgtcaaatataaaatctagtatcccaccttttgatatagttttg 7726  T
Q  211 aatcacca-tttaattacttaaggttat 237  Q
    |||||||| |||| ||||||||||||||    
T  7725 aatcaccattttagttacttaaggttat 7698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 7981 - 7914
Alignment:
Q  48 taccccaccattaggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatttttctga 115  Q
    ||||||||  || ||||||||||| ||||| | |||||||||||||| ||||||||||||| ||||||    
T  7981 taccccactgttgggtaataactcttaaaatttgatgttcagtaccctaccgttgggcattattctga 7914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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