View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8129_high_12 (Length: 268)
Name: NF8129_high_12
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_high_12 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 43145178 - 43144937
Alignment:
| Q |
23 |
aagacaccaattaaaggtagcgagacaaagttgtggtccttctggagacaacatgttgcatagttgaacttcttctatccttgtcaagttccacattgaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43145178 |
aagacaccaattaaaggtagcgagacaaagttgtggtccttctggagacaacatgttgcatagttgaacttcttctatccttgtcaagttccacattgaa |
43145079 |
T |
|
| Q |
123 |
agaagtaccacaaaagtacatatggctaggaaggtcacttgtgataacccacccacacttcaagatgaaagaactgataaatgaaaatgtttattttcac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43145078 |
agaagtaccacaaaagtacatatggctaggaaggtcacttgtgataac----ccacacttcaagatgaaagaactgataaatgaaaatgtttattttcac |
43144983 |
T |
|
| Q |
223 |
aaatcatatctattcatcttagacgcataaatgtcagtggtggaga |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144982 |
aaatcatatctattcatcttagacgcataaatgtcagtggtggaga |
43144937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 43157690 - 43157537
Alignment:
| Q |
16 |
tacttacaagacaccaattaaaggtagcgagacaaagttgtggtccttctggagacaacatgttgcatagttgaacttcttctatccttgtcaagttcca |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| ||||||||||| | |||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
43157690 |
tacttacaagacaccaattataggtagccagagaaagttgtggtgcctctggagacagcatgttgcacagttgaacttct---atccttgtcaagttcca |
43157594 |
T |
|
| Q |
116 |
cattgaaagaagtaccacaaaagtacatatggctaggaaggtcacttgtgataaccc |
172 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
43157593 |
cattgaaagaagttccacaagagtgcatatggctaggaaggtcaccagtgataaccc |
43157537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 43157441 - 43157388
Alignment:
| Q |
215 |
attttcacaaatcatatctattcatcttagacgcataaatgtcagtggtggaga |
268 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||| ||||| ||||||| |
|
|
| T |
43157441 |
attttcacaaaccctatctattcatcgtagatgcataaatatcagtagtggaga |
43157388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 33832474 - 33832559
Alignment:
| Q |
63 |
tctggagacaacatgttgcatagttgaacttcttctatccttgtcaagttccacattgaaagaagtaccacaaaagtacatatggctag |
151 |
Q |
| |
|
||||| |||||||||||||| || ||||||||| || |||||||||||||||||||||||||| | | || ||| ||||||||||| |
|
|
| T |
33832474 |
tctggggacaacatgttgcaaagctgaacttct---attcttgtcaagttccacattgaaagaagctcaagaagagtgcatatggctag |
33832559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University