View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8129_high_13 (Length: 247)
Name: NF8129_high_13
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 12486788 - 12486984
Alignment:
| Q |
34 |
atatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaataccaacttactgcgcacgatgacaattagtgcctctccacggg |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12486788 |
atatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccagggg |
12486887 |
T |
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| Q |
134 |
atttaactttaaagcaccaaatgctaatggatttatctttgtgtccaaggggctctactgcatgtaaactttcattcatttgattgaagaaggttag |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12486888 |
atttaactttaaagcaccaaatgctaatggatttatctttgtgtccaaggggctctattgcatgtaaactttcattcatttgattgaagaaggttag |
12486984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 12540948 - 12541144
Alignment:
| Q |
34 |
atatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaataccaacttactgcgcacgatgacaattagtgcctctccacggg |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12540948 |
atatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgcgcacgatgacaattagtgcctctccagggg |
12541047 |
T |
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| Q |
134 |
atttaactttaaagcaccaaatgctaatggatttatctttgtgtccaaggggctctactgcatgtaaactttcattcatttgattgaagaaggttag |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12541048 |
atttaactttaaagcaccaaatgctaatggatttatctttgtgtccaaggggctctattgcatgtaaactttcattcatttgattgaagaaggttag |
12541144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 34 - 219
Target Start/End: Original strand, 12508220 - 12508405
Alignment:
| Q |
34 |
atatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaataccaacttactgcgcacgatgacaattagtgcctctccacggg |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
12508220 |
atatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgccaacttactgtgcacgatgacaattagtgcctctccagggg |
12508319 |
T |
|
| Q |
134 |
atttaactttaaagcaccaaatgctaatggatttatctttgtgtccaaggggctctactgcatgtaaactttcattcatttgattg |
219 |
Q |
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| T |
12508320 |
atttaactttaaagcaccaaatgctaatggatttatctttgtgtccaaggggctctactggatgtaaactttcattcattcgattg |
12508405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 11378434 - 11378600
Alignment:
| Q |
43 |
aaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaataccaacttactgcgcacgatgacaattagtgcctctccacgggatttaactt |
142 |
Q |
| |
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||||||||||| ||||| ||||||||||| | ||| ||||||||||| | || || ||| || |||||||| | ||||||||| |||| ||| |
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| T |
11378434 |
aaaggcatgaattgtgactttcagtttgcaaaatatattttgaagaatgcaaaagtattgcagacaatgacaatcaatgcctctcctgtggatataaaca |
11378533 |
T |
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| Q |
143 |
taaagcaccaaatgctaatggatttatctttgtgtccaaggggctctactgcatgtaaactttcatt |
209 |
Q |
| |
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||||||||||||| ||||| | ||| ||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
11378534 |
taaagcaccaaattctaatcaagttaactttgtgtccaaggggctcaactacatgtaaaatttcatt |
11378600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 210
Target Start/End: Original strand, 11375277 - 11375425
Alignment:
| Q |
62 |
ttcagtttgcagagtatgttttgaagaataccaacttactgcgcacgatgacaattagtgcctctccacgggatttaactttaaagcaccaaatgctaat |
161 |
Q |
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||||||||||| ||||| ||||||||||| | || || ||| | |||||||| | ||||||| | |||| ||| | ||||||||||||| ||||| |
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| T |
11375277 |
ttcagtttgcaaagtatattttgaagaatgcaaaagtattgcagatcatgacaatcaatgcctcttctatggatataaatataaagcaccaaattctaat |
11375376 |
T |
|
| Q |
162 |
ggatttatctttgtgtccaaggggctctactgcatgtaaactttcattc |
210 |
Q |
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| ||||||||||||| |||||| || ||| |||||||| |||||||| |
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| T |
11375377 |
caagttatctttgtgtcaaaggggatcaactacatgtaaaatttcattc |
11375425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 12659206 - 12659289
Alignment:
| Q |
148 |
caccaaatgctaatggatttatctttgtgtccaaggggctctactgcatgtaaactttcatt--catttgattgaagaaggtta |
229 |
Q |
| |
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|||||||||||| || | ||||||| ||||||||||||||| || |||||||||| ||||| |||||||||| |||||||| |
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| T |
12659206 |
caccaaatgctattgaaattatcttcatgtccaaggggctctgctacatgtaaactctcatttgaatttgattgacgaaggtta |
12659289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 11283330 - 11283358
Alignment:
| Q |
1 |
tatgttaaaataacaccacacaaataata |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
11283330 |
tatgttaaaataacaccacacaaataata |
11283358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12503034 - 12503062
Alignment:
| Q |
1 |
tatgttaaaataacaccacacaaataata |
29 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
12503034 |
tatgttaaaataacaccacacaaataata |
12503062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12528664 - 12528692
Alignment:
| Q |
1 |
tatgttaaaataacaccacacaaataata |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
12528664 |
tatgttaaaataacaccacacaaataata |
12528692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 14987510 - 14987331
Alignment:
| Q |
43 |
aaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaataccaacttactgcgcacgatgacaattagtgcctctccacgggatttaactt |
142 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||||| ||| | ||||||| |||||| |||||||||| |||||| | ||||||||| |
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| T |
14987510 |
aaaggtatgaagtgtgagcttcattttgcagaatatgttttgaacaatgcaaacttaccgcgcacaatgacaattaacgcctcttctgaagatttaacta |
14987411 |
T |
|
| Q |
143 |
taaagcaccaaatgctaatggatttatctttgtgtccaaggggctctactgcatgtaaactttcattcatttgattgaag |
222 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |
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| T |
14987410 |
taaagtaccaaatgctaatggatttatctttgtgtccaaggggctctcctatatgtaatctttcattcatttgattgaag |
14987331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 15329484 - 15329318
Alignment:
| Q |
43 |
aaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaataccaacttactgcgcacgatgacaattagtgcctctccacgggatttaactt |
142 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| | |||||||| | || || ||| ||| |||| ||||| |||||||| |||| ||| | |
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| T |
15329484 |
aaaggcatgaaatgtgagcttcagtttgtagagtatatattgaagaacgcaaaagtattgcacaccatgaaaattaatgcctctctcgtggatataaata |
15329385 |
T |
|
| Q |
143 |
taaagcaccaaatgctaatggatttatctttgtgtccaaggggctctactgcatgtaaactttcatt |
209 |
Q |
| |
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| ||| |||||||||||||| | |||||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
15329384 |
tgaagtaccaaatgctaatgaaattatctctgtgtccaaggggctctactacatgtgtactttcatt |
15329318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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