View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8129_low_1 (Length: 593)
Name: NF8129_low_1
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 495
Target Start/End: Complemental strand, 443869 - 443394
Alignment:
| Q |
15 |
atgaaattggttgagcttagtttctccgactgcatgccaagaatgaagctatcactgtctaaatnnnnnnnnnnnnnnnngactttcatgcaaagcttta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
443869 |
atgaaattggttgagcttagtttctccgactgcatgccaagaatgaagctatcactgtctaaataaaaaaaaa-------gactttcatgcaaagcttta |
443777 |
T |
|
| Q |
115 |
ttattcaatctcaccttatcaaggatgatagcctgaggtgactctgttggttcatcatcactgtctgaatcatcaatttctataatctgcttcttgttct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
443776 |
ttattcaatctcaccttatcaaggatgatagcctgaggtgactctgttggttcatcatcactgtctgaatcatcaatttctataatctgcttcttgttct |
443677 |
T |
|
| Q |
215 |
caagtagaaaagataaagcttctgtcttgatcctaagaaataaaaatacataatcataattaggcttaaactacctaaggtaagattttaaaacatgcat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
443676 |
caagtagaaaagataaagcttctgtcttgatcctaagaaataaaaatacataatcataattaggcttaaactacctaaggtaagattttaaaacatgcat |
443577 |
T |
|
| Q |
315 |
gtaaccaaacaaagaaaacgaatgataccccatagcggtgcaaattgcatttgctgttttttcatcaaaccacactttc--ctggtaaagctcccacaga |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
443576 |
gtaaccaaacaaagaaaacgaatgataccccatagcggtgcaaattgcatttgctgttttttcatcaaaccacactttcctctggtaaagctcccacaga |
443477 |
T |
|
| Q |
413 |
gtcacaagcactctcttggcaaattgtattgacttaaccataagtttggtccctaaatatgtaaggacccataacattagtcc |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
443476 |
gtcacaagcactctcttggcaaattgtattgacttaaccataagtttggtccctaaatatgtaaggacccataacattagtcc |
443394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 524 - 593
Target Start/End: Complemental strand, 443400 - 443331
Alignment:
| Q |
524 |
ttagtccctgaatctgcaagcatcaatcatattagtgtctgaatctagagaccaattgactaatcactaa |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
443400 |
ttagtccctgaatctgcaagcatcaatcatattagtgtctgaatctagagaccaattgactaatcactaa |
443331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 349 - 434
Target Start/End: Original strand, 465379 - 465466
Alignment:
| Q |
349 |
gcggtgcaaattgcatttgctgttttttcatcaaaccacactttc--ctggtaaagctcccacagagtcacaagcactctcttggcaa |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
465379 |
gcggtgcaaattgcatttgctgttttttcatcaaaccacacttccctcttgtaaagcttccacagaatcacaagcactctcatggcaa |
465466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 444754 - 444670
Alignment:
| Q |
352 |
gtgcaaattgcatttgctgttttttcatcaaaccacactttc--ctggtaaagctcccacagagtcacaagcactctcttggcaa |
434 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
444754 |
gtgcaaatagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaa |
444670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University