View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8129_low_14 (Length: 271)
Name: NF8129_low_14
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 46873333 - 46873096
Alignment:
| Q |
19 |
ataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaagga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873333 |
ataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaagga |
46873234 |
T |
|
| Q |
119 |
acaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatctcca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873233 |
acaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgcccctaaattgtgcaggatcttcatgaaggaatttacacttatctcca |
46873134 |
T |
|
| Q |
219 |
tagggacatttctccccattgcaatacttcttgcacag |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873133 |
tagggacatttctccccattgcaatacttcttgcacag |
46873096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 46890746 - 46890593
Alignment:
| Q |
18 |
aataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaagtgacaattctttccaaagg |
117 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
46890746 |
aataaagcaatagaattatatgataaaaccaaaaccaataagcaaaatgagttattgttaccttcttcaccatgagcaaagagacagttcattccaaagg |
46890647 |
T |
|
| Q |
118 |
aacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgc |
171 |
Q |
| |
|
|||||||||| |||| |||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
46890646 |
aacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
46890593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 46890502 - 46890418
Alignment:
| Q |
172 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgcaatacttcttgcacag |
256 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacag |
46890418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University