View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8129_low_3 (Length: 472)
Name: NF8129_low_3
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 29733608 - 29733159
Alignment:
| Q |
1 |
ggattgtgatagaagtggtcggactaatggatgtgataacggtaatatgattaatgcttttaaattcattttagaaaatgatggaattccgacagaagca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
29733608 |
ggattgtgatagaagtggtcggactaaaggatgtgataacggtaatatgattaatgcttttaaattcattttagaaaatggtggaattgcgacagaagca |
29733509 |
T |
|
| Q |
101 |
aattatccatacaagggagttgttaaaggaacttgtaaaaaggcaattcacaaagttcaaattaagagctatgaagaagtccctagtaatagtgaagatt |
200 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29733508 |
aattatccatacaagcgagttgttaaaggaacttgtaaaaaggtaagtcacaaagttcaaattaagagctatgaagaagtccctagtaatagtgaagatt |
29733409 |
T |
|
| Q |
201 |
cactacttaaagctgtggccaatcaaccggtttcggttagtattgatatgagaggcatgttcaagttttactcaagtggaatatttacaggagaatgtgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
29733408 |
cactacttaaagctgtggccaatcaaccggtttcggttggtattgatatgagaggcatgttcaagttttactcaagtgggatttttacaggagaatgtgg |
29733309 |
T |
|
| Q |
301 |
aactaagccaaaccatgctgtaaccatagttggttatggtacatcaaaagatggtattaaatattggttagtgaaaaactcatggagtaaaagatgggga |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29733308 |
aactaagccaaaccatgctttaaccatagttggttatggtacatcaaaagatggtatcaaatattggttagtgaaaaactcatggagtaaaagatgggga |
29733209 |
T |
|
| Q |
401 |
gagaagggttatataaggattaagcgagacatagatgcaaaggaaggcct |
450 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
29733208 |
gagaagggttatataaggattaagcgagatatagatgcaaaggaaggcct |
29733159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 193 - 450
Target Start/End: Complemental strand, 29730080 - 29729823
Alignment:
| Q |
193 |
tgaagattcactacttaaagctgtggccaatcaaccggtttcggttagtattgatatgagaggcatgttcaagttttactcaagtggaatatttacagga |
292 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
29730080 |
tgaagattcactgcttaaagctgtggccaatcaaccggtttcggttagtattgatatgagaggcatgttcaagttttactcaagtgggatttttacagga |
29729981 |
T |
|
| Q |
293 |
gaatgtggaactaagccaaaccatgctgtaaccatagttggttatggtacatcaaaagatggtattaaatattggttagtgaaaaactcatggagtaaaa |
392 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29729980 |
gaatgtagaactaagccaaaccatgctgtaacaatagttggttatggtacatcaaaagatggtattaaatattggttagtgaaaaactcatggagtaaaa |
29729881 |
T |
|
| Q |
393 |
gatggggagagaagggttatataaggattaagcgagacatagatgcaaaggaaggcct |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29729880 |
gatggggagagaagggttatataaggattaagcgagacatagatgcaaaggaaggcct |
29729823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 41 - 366
Target Start/End: Original strand, 29746664 - 29746986
Alignment:
| Q |
41 |
ggtaatatgattaatgcttttaaattcattttagaaaatgatggaattccgacagaagcaaattatccatacaagggagttgttaaaggaacttgtaaaa |
140 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||||| | ||||||| | |||||||||| ||||||||||||||||||| ||||||| | |||| | |
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|
| T |
29746664 |
ggtaataagattgatgcttttaaattcaatttagaaaacggtggaattgccacagaagcaagttatccatacaagggagtt---aaaggaaatagtaaga |
29746760 |
T |
|
| Q |
141 |
aggcaattcacaaagttcaaattaagagctatgaagaagtccctagtaatagtgaagattcactacttaaagctgtggccaatcaaccggtttcggttag |
240 |
Q |
| |
|
||| |||| ||||||| |||||| |||| || ||||||||| ||||| || || ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
29746761 |
aggtgcatcaccaagttcagattaagggctacgagcaagtccctaaaaatagcgaggactcactacttaaagttgtggccaatcaaccggtttcggttaa |
29746860 |
T |
|
| Q |
241 |
tattgatatgagaggcatgttcaagttttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaaccatagttggttatggt |
340 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
29746861 |
tattgatatgagaggtatgctcaaattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaacaatagttggctatggt |
29746960 |
T |
|
| Q |
341 |
acatcaaaagatggtattaaatattg |
366 |
Q |
| |
|
||||| || || ||| ||||||||| |
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|
| T |
29746961 |
acatcgaatgactgtactaaatattg |
29746986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 153 - 447
Target Start/End: Complemental strand, 30056520 - 30056226
Alignment:
| Q |
153 |
aagttcaaattaagagctatgaagaagtccctagtaatagtgaagattcactacttaaagctgtggccaatcaaccggtttcggttagtattgatatgag |
252 |
Q |
| |
|
||||||| ||||||||||| || |||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||| ||| |||| ||||| || |
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|
| T |
30056520 |
aagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggccaatcaaccggtttccgttggtatcgatataag |
30056421 |
T |
|
| Q |
253 |
aggcatgttcaagttttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaaccatagttggttatggtacatcaaaagat |
352 |
Q |
| |
|
|| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || |
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|
| T |
30056420 |
tggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataatagttggttatggtacatcgaatgac |
30056321 |
T |
|
| Q |
353 |
ggtattaaatattggttagtgaaaaactcatggagtaaaagatggggagagaagggttatataaggattaagcgagacatagatgcaaaggaagg |
447 |
Q |
| |
|
|||| ||||||||||||||| || || |||||| | | ||||||||||||||| | |||||||| || |||||||||||||||||||| ||||| |
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|
| T |
30056320 |
ggtactaaatattggttagtaaagaattcatggggcattagatggggagagaagagatatataagaatgaagcgagacatagatgcaaaagaagg |
30056226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 206 - 448
Target Start/End: Complemental strand, 30072991 - 30072745
Alignment:
| Q |
206 |
cttaaagctgtggccaatcaaccggtttcggttagtattgat----atgagaggcatgttcaagttttactcaagtggaatatttacaggagaatgtgga |
301 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30072991 |
cttatagctgtggctaatcaaccggtttcggttagtattgatgtttatgagaggtatgttcagattttactcaagtggaatatttacaggagaatgtgga |
30072892 |
T |
|
| Q |
302 |
actaagccaaaccatgctgtaaccatagttggttatggtacatcaaaagatggtattaaatattggttagtgaaaaactcatggagtaaaagatggggag |
401 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || || |||| |||||| |||||||| || || |||||| | | |||||||| | |
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|
| T |
30072891 |
actaagccaaaccatgctgtaacaatagttggttatggtacatcgaatgacggtactaaatactggttagtaaagaattcatggggcatcagatggggtg |
30072792 |
T |
|
| Q |
402 |
agaagggttatataaggattaagcgagacatagatgcaaaggaaggc |
448 |
Q |
| |
|
|||| | ||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
30072791 |
agaaatgatatataaggatgaagcacgacatagatgcaaaggaaggc |
30072745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 207 - 450
Target Start/End: Complemental strand, 29935044 - 29934798
Alignment:
| Q |
207 |
ttaaagctgtggccaatcaaccggtttcggttagtattga---tatgagaggcatgttcaagttttactcaagtggaatatttacaggagaatgtggaac |
303 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||| ||| ||||| ||||||| |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
29935044 |
ttaaagctgtggccaatcaaccagtttcggtaaacattgacgttataagaggtatgttcagattttactcgagtggaatatctacaggagaatgtggaac |
29934945 |
T |
|
| Q |
304 |
taagccaaaccatgctgtaaccatagttggttatggtacatcaaaagatggtattaaatattggttagtgaaaaactcatggagtaaaagatggggagag |
403 |
Q |
| |
|
| || ||||||||||||||| |||||||| ||||||||||| || || |||| ||||||||||||||| || || |||||| | | |||||||||| |
|
|
| T |
29934944 |
tcagggaaaccatgctgtaacaatagttggctatggtacatcgaatgacggtactaaatattggttagtaaagaattcatggggaacttcatggggagag |
29934845 |
T |
|
| Q |
404 |
aagggttatataaggattaagcgagacatagatgcaaaggaaggcct |
450 |
Q |
| |
|
|| || ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29934844 |
aaaggatatataaggatgaagcgagacatagatgcaaaggaaggcct |
29934798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 29606500 - 29606420
Alignment:
| Q |
41 |
ggtaatatgattaatgcttttaaattcattttagaaaatgatggaattccgacagaagcaaattatccatacaagggagtt |
121 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| | ||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
29606500 |
ggtaataagattgatgcttttaaattcattttagaaaacggtggaattgccacagaagcaagttatccatacaagggagtt |
29606420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 31194258 - 31194201
Alignment:
| Q |
260 |
ttcaagttttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatg |
317 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||||||||| ||| | |||||| |
|
|
| T |
31194258 |
ttcatgttttactcaagtggaatttatacaggagaatgtggaactgagctagaccatg |
31194201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 31185431 - 31185387
Alignment:
| Q |
260 |
ttcaagttttactcaagtggaatatttacaggagaatgtggaact |
304 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
31185431 |
ttcatgttttactcaagtggaatttatacaggagaatgtggaact |
31185387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 31176611 - 31176571
Alignment:
| Q |
264 |
agttttactcaagtggaatatttacaggagaatgtggaact |
304 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
31176611 |
agttttactcaggtggaatttttacaggaaaatgtggaact |
31176571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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