View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8129_low_4 (Length: 421)
Name: NF8129_low_4
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 48651841 - 48652180
Alignment:
| Q |
19 |
atttgggagaaacgaaatccattgttcttcaacctcacgttgtttccatggcaacaaatcacaaagaaaaatcataaccnnnnnnngttggatcaataag |
118 |
Q |
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| T |
48651841 |
atttgggagaaacgaaatccattgttcttcaacctcacgttgtttccatggcaacaaatcacaaagaaaaatcataaccaaaaaaagttggatcaataag |
48651940 |
T |
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| Q |
119 |
gcacaatccaagtaacaataactcattaaatatccttggaaagacataaaataacgattacaaaaagcaccaacataaatagggtaaatagggtgggcac |
218 |
Q |
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| T |
48651941 |
gtacaatccaagtaacaataactcattaaatatccttggaaagacataaaataacgattacaaaaagcaccaacataaatagggtaa-tagggtgg-cac |
48652038 |
T |
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| Q |
219 |
tggcacaaccataaaatgtaacattaaaggacgacaatacaacatgaccataacttaaaaggttaatgaaacaagtgaaataatataacataaaacacca |
318 |
Q |
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| T |
48652039 |
tggcacaaccataaaatgtaacattaaaggacgacaatacaacatgaccataacttaaaaggttaatgaaacaagtgaaataatataacataaaacacca |
48652138 |
T |
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| Q |
319 |
attcagaatcgttgttttagaagttcacgagtcaagtggatt |
360 |
Q |
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| T |
48652139 |
attcagaatcgttgttttagaagttcacgagtcaagtggatt |
48652180 |
T |
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