View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8129_low_5 (Length: 358)
Name: NF8129_low_5
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 4271195 - 4271530
Alignment:
| Q |
1 |
aagcgagtgagacctagcccttgcgcttggcctaatgagcatctggtccaattttttgttgtgggggcgactgagggtgtgggatgcaaatgtcccacat |
100 |
Q |
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| T |
4271195 |
aagcgagtgagacctagcccttgc---tggcctaatgaacatttggtccaattttttgttgtgggggcgactgagggtgtgggaggcaaaggtcccacat |
4271291 |
T |
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| Q |
101 |
tacagttcactgtaaaccaaaatctttcgcaaataataaaatataattgccgctactttgtagtcggagatatagacacaattggctgaacttcattacc |
200 |
Q |
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| T |
4271292 |
tacagttcactgtaaaccaaaatctttcgcaaataataaaacataattgccgctactttgtagtcggagacatagacacatttggctgaacttcattacc |
4271391 |
T |
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| Q |
201 |
gaacgtcatgtgtttgtttgcgataactgttccgttaatcttttgtaccagcttgttgttctagc-aatgactaataatcttgatttatttgtatcatcg |
299 |
Q |
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| T |
4271392 |
gaacgtcatgtgtttgtttgtgataactgttccgttaatcttttgtaccag------attctagcaaatgactaataatcttgatttatttgtatcatcg |
4271485 |
T |
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| Q |
300 |
taatatagttttctgtcatcctagcttcatctcatgaaaatggtg |
344 |
Q |
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| T |
4271486 |
taatatagttttctgtcatcttagcttcatctcatgaaaatggtg |
4271530 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 31592834 - 31592893
Alignment:
| Q |
155 |
actttgtagtcggagatatagacacaattggctgaacttcattaccgaacgtcatgtgtt |
214 |
Q |
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| T |
31592834 |
actttgtagttggagagatagacacaattggccgaacttcataaccaaacatcatgtgtt |
31592893 |
T |
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