View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8129_low_6 (Length: 351)
Name: NF8129_low_6
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8129_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 65 - 332
Target Start/End: Original strand, 2897684 - 2897952
Alignment:
| Q |
65 |
tggttcaaaaggaagaatcattccccttttctttctgttgctggagctcacaacatattctcctaaactagctgcgtaacaataggaaattt-gttaaga |
163 |
Q |
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| T |
2897684 |
tggttcaaaaggaagaatcattccccttttctttctgttgctggagctcacaacatattctcctaaactagctgcgtaacaattggaaattttgttaaga |
2897783 |
T |
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| Q |
164 |
ttctaaagacattatgaatcacaccattttttctgagcaaaaatgaggcatgcaaaagcatcattatagaaaactgagatgccagtcgggttggcacatc |
263 |
Q |
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| T |
2897784 |
ttctaaagacattatgaatcacaccattttttctgagcaaaaatgaggcatgcaaaagcatcattatagaaaactgagatgccagtcgggttggcacatc |
2897883 |
T |
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| Q |
264 |
agctcctaacctaacaatcatctgctgtatacccaaataatattaaataaaataaaagttacattatga |
332 |
Q |
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| T |
2897884 |
agctcctaacctaacaatcatctgctgtatacccaaataatattaaataaaataaaagttacattatga |
2897952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 2886628 - 2886572
Alignment:
| Q |
124 |
ctcctaaactagctgcgtaacaataggaaatttgttaagattctaaagacattatga |
180 |
Q |
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| T |
2886628 |
ctcctgaacttgctgcataacaattgcaaatatgttaagattctaaagccattatga |
2886572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 25523616 - 25523690
Alignment:
| Q |
15 |
acctgtggcatatcaacataataattgacattgtggaatgtcattgtcaatggttcaaaaggaagaatcattccc |
89 |
Q |
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| T |
25523616 |
acctgtggcatatcaacataataattgacattgtggaatgtcattgtcaatggttcaaaaggaagaatcattccc |
25523690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 29776760 - 29776686
Alignment:
| Q |
15 |
acctgtggcatatcaacataataattgacattgtggaatgtcattgtcaatggttcaaaaggaagaatcattccc |
89 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
29776760 |
acctttggcatatcaacataataattgacattatggaatgtcattgtcaatggttgaaatggaagaatcattccc |
29776686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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