View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8129_low_7 (Length: 347)

Name: NF8129_low_7
Description: NF8129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8129_low_7
NF8129_low_7
[»] chr1 (28 HSPs)
chr1 (15-161)||(24552532-24552678)
chr1 (223-294)||(24552446-24552517)
chr1 (15-107)||(24562605-24562697)
chr1 (201-285)||(51688576-51688660)
chr1 (199-285)||(37473268-37473354)
chr1 (202-285)||(33541823-33541906)
chr1 (200-271)||(47498962-47499033)
chr1 (198-271)||(5894282-5894355)
chr1 (199-285)||(41195309-41195395)
chr1 (200-264)||(473036-473100)
chr1 (199-286)||(14331658-14331745)
chr1 (199-285)||(5720850-5720936)
chr1 (199-285)||(5741531-5741617)
chr1 (199-285)||(17727210-17727296)
chr1 (199-285)||(41505556-41505642)
chr1 (201-285)||(17830025-17830109)
chr1 (199-271)||(22343957-22344029)
chr1 (199-255)||(27820475-27820531)
chr1 (205-285)||(42391241-42391321)
chr1 (243-286)||(2295017-2295060)
chr1 (202-269)||(27146369-27146436)
chr1 (199-285)||(1510424-1510510)
chr1 (201-283)||(3234140-3234222)
chr1 (201-255)||(8081769-8081823)
chr1 (203-285)||(29904633-29904714)
chr1 (199-253)||(33546597-33546651)
chr1 (199-281)||(38247323-38247404)
chr1 (201-239)||(46423151-46423189)
[»] chr5 (22 HSPs)
chr5 (199-295)||(3735596-3735692)
chr5 (202-286)||(7319125-7319209)
chr5 (199-271)||(9202867-9202939)
chr5 (199-266)||(16938001-16938068)
chr5 (201-284)||(32372495-32372578)
chr5 (199-285)||(25461870-25461956)
chr5 (201-285)||(12554334-12554418)
chr5 (199-286)||(31051767-31051854)
chr5 (212-271)||(39105356-39105415)
chr5 (200-249)||(12433521-12433570)
chr5 (201-286)||(40439069-40439153)
chr5 (195-255)||(13697904-13697964)
chr5 (204-268)||(19460508-19460572)
chr5 (223-275)||(42646548-42646600)
chr5 (201-284)||(24030518-24030601)
chr5 (199-253)||(7706126-7706180)
chr5 (201-295)||(10639825-10639918)
chr5 (201-286)||(26005352-26005437)
chr5 (199-264)||(32703574-32703639)
chr5 (248-285)||(34667827-34667864)
chr5 (201-285)||(25460963-25461047)
chr5 (200-256)||(40426632-40426688)
[»] chr3 (21 HSPs)
chr3 (201-295)||(30956731-30956825)
chr3 (201-295)||(30972543-30972637)
chr3 (199-281)||(31365391-31365473)
chr3 (200-285)||(944363-944450)
chr3 (199-285)||(20880346-20880432)
chr3 (201-286)||(35959570-35959655)
chr3 (202-285)||(1508696-1508779)
chr3 (203-286)||(19983653-19983736)
chr3 (199-286)||(53789575-53789662)
chr3 (203-254)||(34610942-34610993)
chr3 (201-271)||(402660-402730)
chr3 (199-285)||(20170392-20170478)
chr3 (198-252)||(46886835-46886889)
chr3 (199-267)||(20257429-20257497)
chr3 (243-286)||(46778341-46778384)
chr3 (199-273)||(26990607-26990681)
chr3 (224-290)||(30443658-30443724)
chr3 (201-271)||(34235195-34235265)
chr3 (243-279)||(139794-139830)
chr3 (202-286)||(2719341-2719425)
chr3 (207-255)||(28240213-28240261)
[»] chr2 (25 HSPs)
chr2 (199-286)||(41407170-41407257)
chr2 (198-269)||(39659639-39659710)
chr2 (199-286)||(11863800-11863887)
chr2 (199-286)||(41293345-41293434)
chr2 (243-285)||(42659266-42659308)
chr2 (208-281)||(3311922-3311995)
chr2 (199-250)||(4606860-4606911)
chr2 (199-277)||(1633669-1633747)
chr2 (199-285)||(23974605-23974691)
chr2 (201-279)||(38010283-38010361)
chr2 (201-269)||(2416194-2416262)
chr2 (200-268)||(36534668-36534736)
chr2 (198-269)||(7043843-7043914)
chr2 (202-285)||(12795664-12795747)
chr2 (224-283)||(31561870-31561929)
chr2 (206-285)||(32592463-32592542)
chr2 (196-271)||(40682492-40682567)
chr2 (243-286)||(41241246-41241289)
chr2 (199-246)||(41812228-41812275)
chr2 (200-286)||(12464587-12464673)
chr2 (199-257)||(15757809-15757867)
chr2 (201-254)||(4074974-4075027)
chr2 (247-296)||(45229429-45229478)
chr2 (199-239)||(26143791-26143831)
chr2 (203-275)||(41851408-41851480)
[»] chr8 (15 HSPs)
chr8 (201-285)||(14956410-14956494)
chr8 (199-285)||(1058189-1058275)
chr8 (198-270)||(34236040-34236112)
chr8 (219-285)||(38353239-38353305)
chr8 (201-285)||(38750229-38750313)
chr8 (245-295)||(12976128-12976178)
chr8 (200-286)||(36963459-36963545)
chr8 (204-285)||(9130425-9130506)
chr8 (202-295)||(29168157-29168250)
chr8 (199-271)||(26215375-26215447)
chr8 (223-271)||(40859837-40859885)
chr8 (200-254)||(29819026-29819080)
chr8 (199-285)||(35534725-35534810)
chr8 (199-232)||(18133555-18133588)
chr8 (199-256)||(40980999-40981056)
[»] chr4 (23 HSPs)
chr4 (201-285)||(50681204-50681288)
chr4 (201-271)||(50662851-50662921)
chr4 (234-295)||(31851358-31851419)
chr4 (203-271)||(3155486-3155554)
chr4 (243-286)||(22030117-22030160)
chr4 (200-281)||(17204008-17204089)
chr4 (198-271)||(35571951-35572023)
chr4 (201-285)||(43505829-43505911)
chr4 (200-285)||(25904325-25904414)
chr4 (199-255)||(44797761-44797817)
chr4 (201-271)||(2987069-2987140)
chr4 (201-268)||(11389407-11389474)
chr4 (203-268)||(679136-679202)
chr4 (243-285)||(24169174-24169216)
chr4 (247-281)||(39011178-39011212)
chr4 (201-271)||(44863081-44863151)
chr4 (200-257)||(27026-27083)
chr4 (206-271)||(25332656-25332721)
chr4 (200-260)||(437370-437430)
chr4 (198-246)||(4212810-4212858)
chr4 (203-271)||(22539166-22539234)
chr4 (198-238)||(34213730-34213770)
chr4 (200-256)||(51629991-51630047)
[»] chr6 (12 HSPs)
chr6 (199-286)||(24626164-24626251)
chr6 (201-283)||(34430587-34430669)
chr6 (199-268)||(23063650-23063719)
chr6 (199-279)||(6538386-6538466)
chr6 (199-286)||(30926409-30926494)
chr6 (199-271)||(35069431-35069503)
chr6 (234-295)||(29754184-29754245)
chr6 (199-271)||(264250-264322)
chr6 (203-270)||(847941-848008)
chr6 (243-286)||(6909987-6910030)
chr6 (248-295)||(26550308-26550355)
chr6 (217-285)||(18076083-18076151)
[»] chr7 (21 HSPs)
chr7 (199-285)||(45263962-45264048)
chr7 (200-285)||(21568743-21568828)
chr7 (201-284)||(18865166-18865249)
chr7 (199-285)||(46078016-46078102)
chr7 (247-295)||(4970893-4970941)
chr7 (199-271)||(33672957-33673029)
chr7 (199-271)||(46139821-46139893)
chr7 (199-270)||(7241451-7241522)
chr7 (199-254)||(27863843-27863898)
chr7 (199-274)||(33128626-33128701)
chr7 (199-285)||(38500033-38500119)
chr7 (203-264)||(28900760-28900821)
chr7 (200-280)||(3308372-3308452)
chr7 (199-267)||(19131239-19131307)
chr7 (253-296)||(17983705-17983748)
chr7 (203-250)||(18965858-18965905)
chr7 (204-271)||(33552940-33553007)
chr7 (201-278)||(40196248-40196323)
chr7 (199-285)||(46280374-46280460)
chr7 (200-271)||(48131228-48131299)
chr7 (251-295)||(48140137-48140181)
[»] scaffold0012 (1 HSPs)
scaffold0012 (234-295)||(207686-207747)
[»] scaffold0050 (1 HSPs)
scaffold0050 (201-266)||(58475-58540)
[»] scaffold0018 (1 HSPs)
scaffold0018 (199-285)||(157976-158062)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 24552678 - 24552532
Alignment:
Q  15 atggtgaatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatcatagctagctttcttatctgtggcaaaca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24552678 atggtgaatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatcatagctagctttcttatctgtggcataca 24552579  T
Q  115 tacaagataatcaggtaatatagtttattcaataaaagcaacactaa 161  Q
    || |||||||| | |||||||||||||||||||||||||||||||||    
T  24552578 tagaagataattaagtaatatagtttattcaataaaagcaacactaa 24552532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 24552517 - 24552446
Alignment:
Q  223 gcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaa 294  Q
    |||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  24552517 gcagcttatagcacaagtgattatcatgataagcgcttatgtacaagcttacataagctatttcaataacaa 24552446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 24562697 - 24562605
Alignment:
Q  15 atggtgaatgtagcagggcggcctcttgcaatgggatcaggagatatttgaacttctttaacctcaatatcatagctagctttcttatctgtg 107  Q
    |||||||||||||||||  |||||||||||| ||| |||||||||||||||||| ||||||| | || |||||||||| |||||||| |||||    
T  24562697 atggtgaatgtagcaggttggcctcttgcaacggggtcaggagatatttgaactcctttaacttgaacatcatagctatctttcttacctgtg 24562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 51688576 - 51688660
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||| ||||||||| |  ||||||| ||||||||||||| |||||| ||||||||||||| ||||||||    
T  51688576 tgtttggataaacaacttatttgcagcttatagtacaagtgcttatcatgataagtgtttatatataagcttacatgagctattt 51688660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 37473268 - 37473354
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||||| |||||||||   |||||||  ||||||||| ||||  |||||||||||||||||||||||||||    
T  37473268 cctgtttggataaacaacttatttgcagcttattgcacaagttcttatcatgacaagcacttatgtataagcttacataagctattt 37473354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 33541906 - 33541823
Alignment:
Q  202 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| ||||||||||||||  ||||| |||||    
T  33541906 gtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataagcgcttatgtataagcttgaataagatattt 33541823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 47499033 - 47498962
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| || ||||||||||    
T  47499033 ctgtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtataagct 47498962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 5894355 - 5894282
Alignment:
Q  198 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||||||||| ||||| || |||||| | |||||||| ||||||||||||||| |||||||||||||    
T  5894355 tcctgtttggataaacagcttatttgaagcttatagcacaagtgcttatcatgataagcgcttatgtataagct 5894282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 41195395 - 41195309
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||| ||||||| ||||||||| | |||||| | ||||| |||||| || ||||||||||| |||||||| ||||||    
T  41195395 cctgtttggataaataacttatttgcagcttatagcacaagcgcttatcctgataatcgcttatgtataagtttacataaactattt 41195309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 473036 - 473100
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgt 264  Q
    ||||||||||||||||||||| |||||||||||||| ||| | |||||||| |||||| ||||||    
T  473036 ctgtttggataaacaacttatttgcagcttacaacaaaagcgcttatcatggtaagcgcttatgt 473100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 14331658 - 14331745
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||| |||||||| ||||| || |||||| | |||||| | || |||||||||||  ||||||||||||| ||||||||||||||    
T  14331658 cctgtttagataaacagcttatttgaagcttatagcacaagcgcttctcatgataagcacttatgtataagctaacataagctatttc 14331745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 5720850 - 5720936
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||| | ||||| ||  ||||| ||||||||    |||||||||||||| ||||||||||| |||| ||||||||||    
T  5720850 cctgtttggataaatatcttatttgtggcttataacacaagcacctatcatgataagcgcttatgtataagtttacgtaagctattt 5720936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 5741531 - 5741617
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||| | ||||| ||  ||||| | ||||||    |||||||||||||| ||||||||||| |||||||||||||||    
T  5741531 cctgtttggataaatatcttatttgtggcttatagcacaagcacctatcatgataagcgcttatgtataagtttacataagctattt 5741617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 17727296 - 17727210
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||||| || |||||| | ||||||   |||||| |||||||| |||  |||||| || ||||||||||||    
T  17727296 cctgtttggataaacaacttatgtgtagcttatagcacaagcacttatcaagataagcgcttagatataaggttgcataagctattt 17727210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 41505556 - 41505642
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||| ||||| ||||||||| | |||||  | |||| |||||||| | ||||| ||  |||||||||||||||||    
T  41505556 cctgtttggataaacagcttatttgcagcttatagcacaaacgcttatgatgataagtgcttatgcattggcttacataagctattt 41505642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 17830025 - 17830109
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||| ||| | ||||||| | ||||||   ||||||||||||||  |||| |||| | |||||||||||||||    
T  17830025 tgtttggataaacaacatatcttcagcttatatcacaagcacttatcatgataagcacttatctatacgattacataagctattt 17830109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 22343957 - 22344029
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||||| |||||||| |||| |||||  |||||| | ||||||||||||| | ||||| |||||||    
T  22343957 cctgtttggataatcaacttatttgcaacttaccgcacaagcgcttatcatgataagagcttatgcataagct 22344029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 27820531 - 27820475
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 255  Q
    |||||||||||||||||||||| ||||||||| | || ||| | |||||||||||||    
T  27820531 cctgtttggataaacaacttatttgcagcttatagcataagcgcttatcatgataag 27820475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 42391241 - 42391321
Alignment:
Q  205 tggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||||| |||| ||| ||||||| |||||  | ||||||||||||| | |||||||||||||| | ||| ||||||    
T  42391241 tggataaacaatttatttgcggcttacagcacaaaagcttatcatgataagtgcttatgtataagcttgcttaaactattt 42391321  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 2295017 - 2295060
Alignment:
Q  243 ttatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||    
T  2295017 ttatcatgataagtgcttatgcataagcttacataagctatttc 2295060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 27146436 - 27146369
Alignment:
Q  202 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataag 269  Q
    ||||||||||| | ||||| ||||||||| | || ||||   ||||||||||||||||||||||||||    
T  27146436 gtttggataaatagcttatttgcagcttatagcataagtacatatcatgataagcgtttatgtataag 27146369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 1510510 - 1510424
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||| ||||| || | |||| | |||||| | ||||| ||||||||  |||| ||||||||| || |||||||||    
T  1510510 cctgtttggataaacagcttatttgtatcttatagcacaagcgcttatcttgataagcacttatatataagcttgcaaaagctattt 1510424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 3234222 - 3234140
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctat 283  Q
    |||||||||||  ||||| | |||| |||| | |||||| | ||||||||||||||| |||| ||||||| | ||||||||||    
T  3234222 tgtttggataactaacttgtttgcaacttatagcacaagcgcttatcatgataagcgcttatatataagcgtgcataagctat 3234140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 8081769 - 8081823
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 255  Q
    |||||||||||||||||||| ||||||||| |    |||||||||||||||||||    
T  8081769 tgtttggataaacaacttatctgcagcttatagattaagtgattatcatgataag 8081823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 29904633 - 29904714
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||||||||||| |   |||| | ||||||||||||  | ||||| ||||||| | |||||||||||    
T  29904633 tttggataaacaacttatatgcagcttatagttcaagcgcttatcatgataaaagcttatg-ataagctcatataagctattt 29904714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 33546651 - 33546597
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgata 253  Q
    |||||||||||||||| |||||  |||||||| | |||||||| |||||||||||    
T  33546651 cctgtttggataaacagcttattcgcagcttaaagcacaagtgtttatcatgata 33546597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 38247323 - 38247404
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagct 281  Q
    |||||||||||||||| || || ||||||||| | ||||||   ||||||||||| ||  ||||||||||||| |||||||||    
T  38247323 cctgtttggataaacagct-atttgcagcttatagcacaagcacttatcatgatatgcacttatgtataagctcacataagct 38247404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 46423151 - 46423189
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaag 239  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  46423151 tgtttggataaacaacttatttgcagcttataacacaag 46423189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 3735692 - 3735596
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    |||||||||||||||||| ||| ||||||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||    
T  3735692 cctgtttggataaacaacctatttgcagcttatagcacaagagattatcatgataagcgcttatggataagcttacataagctatttctatagcaaa 3735596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 7319209 - 7319125
Alignment:
Q  202 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||| ||||||| ||||| | ||||||| | |||||| | ||||||||||||||  ||||| ||||||||||||||||||||||    
T  7319209 gtttgaataaacagcttatttacagcttatagcacaagcgcttatcatgataagcacttatgcataagcttacataagctatttc 7319125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 9202939 - 9202867
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||||||||||| ||||| ||||||||| | |||||||| ||||||||||||| | |||| ||||||||    
T  9202939 cctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataagtgcttatatataagct 9202867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 16938068 - 16938001
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 266  Q
    |||||||||| ||||||||||| || |||||| |||||||||| ||||||||||||||  ||||||||    
T  16938068 cctgtttggacaaacaacttatttgaagcttataacacaagtgtttatcatgataagcacttatgtat 16938001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 32372495 - 32372578
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatt 284  Q
    |||||||||||||||||||| ||||||||| | ||||||   ||||||||||||||  |||||||||  ||||||||| |||||    
T  32372495 tgtttggataaacaacttatttgcagcttatagcacaagcacttatcatgataagcccttatgtatacacttacataaactatt 32372578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 25461956 - 25461870
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||||||| ||  |||| || |||||| |||||||| | ||||||||||||| | |||| ||||||||| ||||||||||||    
T  25461956 cctgtttggataagcaggttatttgtagcttataacacaagcgcttatcatgataagtggttatatataagcttgcataagctattt 25461870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 12554334 - 12554418
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||| ||||||||| | |||||  | |||| ||||||||  |||| | |||||||| ||||||||||||    
T  12554334 tgtttggataaacaacttatttgcagcttaaagcacaaacgcttattatgataagtatttacgcataagcttccataagctattt 12554418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 31051767 - 31051854
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    |||||||| |||||| | ||||  |||||||| | |||||||| ||||||||||||  | |||| |||||||||||||||||| ||||    
T  31051767 cctgtttgaataaaccatttattcgcagcttatagcacaagtgcttatcatgataaatgattatctataagcttacataagctgtttc 31051854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 39105356 - 39105415
Alignment:
Q  212 acaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||| ||||||||| | || ||||| ||||||||||||||| |||||||||||||    
T  39105356 acaacttatttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagct 39105415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 12433570 - 12433521
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcat 249  Q
    ||||||||||||||||||||| ||||||||| |||||||| | |||||||    
T  12433570 ctgtttggataaacaacttatttgcagcttataacacaagcgtttatcat 12433521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 40439153 - 40439069
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    |||||||||||||| ||||| |||| |||| | |||||| | ||||| ||||| ||  | ||||||||||||||||||||||||||    
T  40439153 tgtttggataaacagcttatttgcaccttata-cacaagcgcttatcttgataggcactcatgtataagcttacataagctatttc 40439069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 13697964 - 13697904
Alignment:
Q  195 tattcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 255  Q
    |||| ||||||||||||||||||||| ||||||||| |||| |||   |||||||||||||    
T  13697964 tattactgtttggataaacaacttatttgcagcttataacataagcatttatcatgataag 13697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 19460572 - 19460508
Alignment:
Q  204 ttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataa 268  Q
    ||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||  ||||||||||    
T  19460572 ttggataaacagcttatttgcagcttatagcacaaatgcttatcatgataagcacttatgtataa 19460508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 42646548 - 42646600
Alignment:
Q  223 gcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttaca 275  Q
    |||||||| | |||||||| ||||||||||||||| |||| ||||||||||||    
T  42646548 gcagcttatagcacaagtgcttatcatgataagcgcttatatataagcttaca 42646600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 24030601 - 24030518
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatt 284  Q
    |||||||||||||| ||||| ||||||||| | ||||||   ||||||||||||| |    |||||||||| ||||||||||||    
T  24030601 tgtttggataaacagcttatttgcagcttatagcacaagcacttatcatgataagtgcgcgtgtataagctcacataagctatt 24030518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 7706180 - 7706126
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgata 253  Q
    |||||||| ||||||||||||| ||||| ||| | |||||||| |||||||||||    
T  7706180 cctgtttgtataaacaacttatttgcaggttatagcacaagtgcttatcatgata 7706126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 295
Target Start/End: Original strand, 10639825 - 10639918
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    |||||||||||||| ||||| |||| |||| | || ||||| |||||| |||||||  |||||||||||  || |||||||||||| ||| ||||    
T  10639825 tgtttggataaacagcttatttgcaactta-agcaaaagtggttatcacgataagcacttatgtataagtctatataagctatttctatagcaaa 10639918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 26005437 - 26005352
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||||||||||||||||  | |||||| | |||||    |||| |||||||  | |||||||||||||| |||||||||||||    
T  26005437 tgtttggataaacaacttattagaagcttatagcacaaacacttattatgataattgcttatgtataagcttgcataagctatttc 26005352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 32703639 - 32703574
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgt 264  Q
    ||||||| || ||||||||||| ||||||||| | ||||||   ||||||||||||||| ||||||    
T  32703639 cctgtttagaaaaacaacttatttgcagcttatagcacaagcatttatcatgataagcgcttatgt 32703574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 34667864 - 34667827
Alignment:
Q  248 atgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  34667864 atgataagtgtttatgtataagattacataagctattt 34667827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 25460963 - 25461047
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||| |||||||  |||||| | || |||   ||||||||||||| | |||| ||||||||| | ||||||||||    
T  25460963 tgtttggataaacagcttatatttagcttatagcataagcacttatcatgataagagcttatatataagcttgcgtaagctattt 25461047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 40426632 - 40426688
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagc 256  Q
    |||||||||||||||||| || ||||||||| | ||||||   ||||||||||||||    
T  40426632 ctgtttggataaacaactcatttgcagcttatagcacaagcacttatcatgataagc 40426688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 30956825 - 30956731
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    |||||||||||||| ||||| ||||||||| | |||||| | |||||||||||||| |||||| |||||||||||||||||||||| ||| ||||    
T  30956825 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaa 30956731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 30972637 - 30972543
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    |||||||||||||| ||||| ||||||||| | |||||| | |||||||||||||| |||||| |||||||||||||||||||||| ||| ||||    
T  30972637 tgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagctatttctatagcaaa 30972543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 31365473 - 31365391
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagct 281  Q
    ||||| |||||||||| ||||| ||||||||| | |||||||||||||||||||||||  |||||||||||||| ||||||||    
T  31365473 cctgtgtggataaacagcttatttgcagcttatagcacaagtgattatcatgataagcacttatgtataagcttgcataagct 31365391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 944363 - 944450
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacac-aagtgattatcatgataagc-gtttatgtataagcttacataagctattt 285  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||| | ||| |||||||||| ||||||||||||    
T  944363 ctgtttggataaacaacttatttgcagcttataacactaagtgcttatcatgataagcggcttacgtataagcttgcataagctattt 944450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 20880346 - 20880432
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||| ||||||||| ||||| ||| | |||||| | ||||||| ||||| | |||||||||||||||||||||||||||    
T  20880346 cctgtttggatagacaacttatttgcagtttatagcacaagcggttatcataataagtgcttatgtataagcttacataagctattt 20880432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 35959655 - 35959570
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    |||||||||||||| ||||| ||||||||| | ||||||   ||||||||||||| | ||||||||||||| ||||||||||||||    
T  35959655 tgtttggataaacagcttatttgcagcttatatcacaagctcttatcatgataagagcttatgtataagctcacataagctatttc 35959570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 285
Target Start/End: Complemental strand, 1508779 - 1508696
Alignment:
Q  202 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||| ||||| ||||| |||| |||| | |||||||| ||||||||||||||| |||||||||||||| ||||| ||||||    
T  1508779 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 1508696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 19983653 - 19983736
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    |||||||||||||||||| ||||  ||| | || || || |||| |||||||||||||||||||||||||||||||| ||||||    
T  19983653 tttggataaacaacttatttgcaatttatagcataattgtttattatgataagcgtttatgtataagcttacataagttatttc 19983736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 53789662 - 53789575
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||||| ||||| |||||  |||||||||   |||||| | ||||||||||||||  |||||| |||||||||||||||||||||    
T  53789662 cctgtttgggtaaacgacttaattgcagcttatgccacaagcgcttatcatgataagcacttatgtgtaagcttacataagctatttc 53789575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 34610993 - 34610942
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataa 254  Q
    |||||||||||||||||| ||||||||| |||||||| | ||||||||||||    
T  34610993 tttggataaacaacttatctgcagcttataacacaagcgcttatcatgataa 34610942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 402730 - 402660
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||| | ||||||||||| ||||||| | | |||||||| ||||||||||||| | |||||||||||||    
T  402730 tgtttgaacaaacaacttatttgcagctcatagcacaagtgcttatcatgataagggcttatgtataagct 402660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 20170392 - 20170478
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||| ||| ||||||||||| ||||| ||| | ||||| || || |||||||||||| |||||||| ||||| || |||||||||    
T  20170392 cctgttgggagaaacaacttatttgcagtttatatcacaactgcttttcatgataagcgcttatgtatcagcttgcacaagctattt 20170478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 46886889 - 46886835
Alignment:
Q  198 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgat 252  Q
    ||||||||||||||||||||||| ||||||||| | || ||||| ||||||||||    
T  46886889 tcctgtttggataaacaacttatttgcagcttatagcataagtgcttatcatgat 46886835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 20257429 - 20257497
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtata 267  Q
    ||||||||||| ||||| |||| ||||||||| ||||||||   |||||| |||||||| |||||||||    
T  20257429 cctgtttggattaacaatttatttgcagcttataacacaagactttatcacgataagcgcttatgtata 20257497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 46778384 - 46778341
Alignment:
Q  243 ttatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||    
T  46778384 ttatcatgataagcgcttatgtatcagcttatataagctatttc 46778341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 26990681 - 26990607
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagctta 273  Q
    ||||||||||| ||||||||||||||| |||| ||||||||   |||  |||||||||  ||||| |||||||||    
T  26990681 cctgtttggatcaacaacttatatgcaacttataacacaagcacttacaatgataagcacttatgaataagctta 26990607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 30443658 - 30443724
Alignment:
Q  224 cagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaata 290  Q
    ||||||| | |||||||| ||||||||||||||  ||||| || ||||||||||||| |||| ||||    
T  30443658 cagcttatagcacaagtgcttatcatgataagcaattatgcatgagcttacataagcaattttaata 30443724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 34235265 - 34235195
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||||||||||||||| || |||||| |  ||| ||| ||||||||||||||  ||||||| |||||    
T  34235265 tgtttggataaacaacttatttgtagcttatagtacatgtgcttatcatgataagcacttatgtagaagct 34235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 139830 - 139794
Alignment:
Q  243 ttatcatgataagcgtttatgtataagcttacataag 279  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  139830 ttatcatgataagcgcttatgcataagcttacataag 139794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 2719341 - 2719425
Alignment:
Q  202 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||| ||||||| ||||| | ||||||| | |||||  | ||||||||||||||  ||| | ||||||||||| ||||||||||    
T  2719341 gtttgaataaacagcttatttacagcttatagcacaaacgcttatcatgataagcacttacgcataagcttacacaagctatttc 2719425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 28240213 - 28240261
Alignment:
Q  207 gataaacaacttatatgcagcttacaacacaagtgattatcatgataag 255  Q
    |||||||||||||| ||||||||| | |||||| | |||||||||||||    
T  28240213 gataaacaacttatctgcagcttatagcacaagcgcttatcatgataag 28240261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 41407170 - 41407257
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    |||||||||||||||| ||| | ||||||||| | |||||| | ||||||||||||||  ||||||||||||||||||||||||||||    
T  41407170 cctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataagcacttatgtataagcttacataagctatttc 41407257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 39659710 - 39659639
Alignment:
Q  198 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataag 269  Q
    ||||||||||||||||||||||| ||||||||| | ||||| || ||||||||||||||| |||||||||||    
T  39659710 tcctgtttggataaacaacttatttgcagcttagagcacaaatgcttatcatgataagcgcttatgtataag 39659639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 11863800 - 11863887
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||| |||||||||||||||| | ||||||||| |||||    || |||||||||||| ||||| ||||||||||||||||||||||    
T  11863800 cctgtctggataaacaacttattttcagcttacagcacaaacacttgtcatgataagcgcttatgcataagcttacataagctatttc 11863887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 41293434 - 41293345
Alignment:
Q  199 cctgtttggataaacaacttatat--gcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    |||||||||||||||||||||| |  |||||||| | ||||||||  ||||||| ||||||  ||||| |||||||||||||| ||||||    
T  41293434 cctgtttggataaacaacttatttttgcagcttatagcacaagtgcgtatcatggtaagcgcgtatgtgtaagcttacataagttatttc 41293345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 42659308 - 42659266
Alignment:
Q  243 ttatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  42659308 ttatcatgataagcgcttatgtataagcttacataagctattt 42659266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 3311922 - 3311995
Alignment:
Q  208 ataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagct 281  Q
    |||||||| |||| | ||||||| | |||||||||||||||||| ||| | |||||||||||| ||||||||||    
T  3311922 ataaacaaattattttcagcttatagcacaagtgattatcatgaaaagtgcttatgtataagcatacataagct 3311995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 4606860 - 4606911
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatg 250  Q
    ||||||||||||||||||||||  |||||||| |||||||||| ||||||||    
T  4606860 cctgtttggataaacaacttattcgcagcttataacacaagtgcttatcatg 4606911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 1633747 - 1633669
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacata 277  Q
    |||||||||||||||| ||||| ||||||||| | || ||||| |||||||||||||   |||||| | ||||||||||    
T  1633747 cctgtttggataaacagcttatttgcagcttatagcagaagtgcttatcatgataagatcttatgtttgagcttacata 1633669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 23974691 - 23974605
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||||||| || ||||| || |||||| | |||||||||| | || |||||||  ||||| |||||||||| ||||||||||    
T  23974691 cctgtttggataagcagcttatttggagcttatatcacaagtgataagcaagataagcacttatgcataagcttacttaagctattt 23974605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 38010283 - 38010361
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataag 279  Q
    ||||| |||||||||||||| ||||||||| | |||||||| ||||||||||| ||  ||| || ||||||||| ||||    
T  38010283 tgtttagataaacaacttatttgcagcttatatcacaagtgcttatcatgatatgcccttacgtctaagcttacgtaag 38010361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 2416194 - 2416262
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataag 269  Q
    |||||||||||||||||||| | ||||||| | |||||||  |||||||| |||| | |||||||||||    
T  2416194 tgtttggataaacaacttattttcagcttatagcacaagttcttatcatgttaagtgcttatgtataag 2416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 36534668 - 36534736
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataa 268  Q
    ||||||||||||||||||||| | ||| ||| |||| ||||| ||||||||||||| | || |||||||    
T  36534668 ctgtttggataaacaacttattttcagtttataacataagtgcttatcatgataagtgcttgtgtataa 36534736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 7043914 - 7043843
Alignment:
Q  198 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataag 269  Q
    ||||||||||||||||||||||| ||||||||| |||| |  || ||||||  |||| || |||||||||||    
T  7043914 tcctgtttggataaacaacttatttgcagcttataacatagatgtttatcacaataaacgcttatgtataag 7043843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 12795664 - 12795747
Alignment:
Q  202 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||  |||| ||||| ||| | || ||||| ||||||||||||||  || |  |||||||||||||||||||||    
T  12795664 gtttggataaacagtttatttgcagtttatagcataagtgcttatcatgataagcactttttcataagcttacataagctattt 12795747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 31561929 - 31561870
Alignment:
Q  224 cagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctat 283  Q
    ||||||| | |||||| | ||||||||||||||| |||  ||||||||||||||||||||    
T  31561929 cagcttatagcacaagcgtttatcatgataagcgcttacatataagcttacataagctat 31561870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 32592463 - 32592542
Alignment:
Q  206 ggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||||||||| || |||||| | |||||    ||||||| ||||||| |||||||||||||| ||||| ||||||    
T  32592463 ggataaacaacttatttgtagcttatagcacaaacacttatcattataagcgcttatgtataagcttgcataaactattt 32592542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 40682567 - 40682492
Alignment:
Q  196 attcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||||||||||| ||||| |||| || | | | |||| | |||||||| |||||| |||||||||||||    
T  40682567 attcctgtttggataaacatcttatttgcaactcatagcgcaagcgcttatcatggtaagcgcttatgtataagct 40682492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 41241289 - 41241246
Alignment:
Q  243 ttatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||    
T  41241289 ttatcatgatatgcgcttatggataagcttacataagctatttc 41241246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 41812275 - 41812228
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattat 246  Q
    |||||||||||||||||||||| ||||| ||| | |||||||||||||    
T  41812275 cctgtttggataaacaacttatttgcagtttatagcacaagtgattat 41812228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 12464673 - 12464587
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||||||||||  ||||| || |||||| ||| || |   ||||||||||||| |  |||||| ||||||||||||||||||||    
T  12464673 ctgtttggataaacggcttatttgtagcttataacgcacgcacttatcatgataagtgcatatgtagaagcttacataagctatttc 12464587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 15757867 - 15757809
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcg 257  Q
    |||||||||||||||| ||||| | ||||||| | |||||| | |||||||||||||||    
T  15757867 cctgtttggataaacagcttattttcagcttatagcacaagcgcttatcatgataagcg 15757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 4075027 - 4074974
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataa 254  Q
    ||||||||||||||| ||||||| |||||| || ||| ||| ||||||||||||    
T  4075027 tgtttggataaacaatttatatgaagcttataagacaggtgtttatcatgataa 4074974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 45229429 - 45229478
Alignment:
Q  247 catgataagcgtttatgtataagcttacataagctatttcaataacaaac 296  Q
    ||||||||| | ||||||||||| |||||||||||||||| ||| |||||    
T  45229429 catgataagtgcttatgtataagtttacataagctatttctatagcaaac 45229478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 26143831 - 26143791
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaag 239  Q
    |||||||||||||||||||||| ||||| ||| ||||||||    
T  26143831 cctgtttggataaacaacttatttgcagtttataacacaag 26143791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 41851408 - 41851480
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttaca 275  Q
    |||||||||||| ||||| |||||| || | |||||| | |||||||| ||| || |||| ||||||||||||    
T  41851408 tttggataaacatcttatttgcagcatatagcacaagcgcttatcatgctaaacgcttatatataagcttaca 41851480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 14956494 - 14956410
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||| ||||||||| | |||||  | ||||||||||||||  |||||||||||||| ||||||||||||    
T  14956494 tgtttggataaacaacttatttgcagcttatagcacaatcgcttatcatgataagcacttatgtataagcttgcataagctattt 14956410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 1058275 - 1058189
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||| ||||||| ||||| ||||||||| | |||||| | |||  |||||||||| |||||||||||||||||||||||||||    
T  1058275 cctgtttgaataaacagcttatttgcagcttatagcacaagcgcttactatgataagcgcttatgtataagcttacataagctattt 1058189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 34236040 - 34236112
Alignment:
Q  198 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagc 270  Q
    ||||||||||||||||||||||| ||||||||| |||||||  | ||||||||||||||  ||||| ||||||    
T  34236040 tcctgtttggataaacaacttatttgcagcttataacacaaacggttatcatgataagcccttatggataagc 34236112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 38353239 - 38353305
Alignment:
Q  219 atatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||| |  ||||||| |||||||||||| || |||||||||||||| ||||||||||||    
T  38353239 atatgcagcttatattacaagtgcttatcatgataatcgcttatgtataagcttgcataagctattt 38353305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 38750229 - 38750313
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||| || |||||  |  ||| |   ||||||||||||||| |||||||||||||| ||||||||||||    
T  38750229 tgtttggataaacaacttatttgaagcttgaagtacatgcacttatcatgataagcgcttatgtataagcttgcataagctattt 38750313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 12976128 - 12976178
Alignment:
Q  245 atcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||| ||||    
T  12976128 atcatgataagcgcttatgtataagctcacataagctatttctatagcaaa 12976178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 36963545 - 36963459
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    |||||||| ||||||| |||| ||||||||| | |||||| | |||||||||||| || ||| | |||||||| | |||||||||||    
T  36963545 ctgtttgggtaaacaatttatttgcagcttatagcacaagcgcttatcatgataaacgcttacggataagctttcttaagctatttc 36963459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 9130506 - 9130425
Alignment:
Q  204 ttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||| | ||||| ||||||||| | |||||||| | |||||||||| |  |||||||||||||  ||||||||||||    
T  9130506 ttggataaatagcttatttgcagcttatagcacaagtggtcatcatgataatcacttatgtataagctcgcataagctattt 9130425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 29168250 - 29168157
Alignment:
Q  202 gtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    ||||||||| |||  |||| ||||||||| | |||||| | ||||||| | ||| | ||||||||||||| |||||||||||||| ||| ||||    
T  29168250 gtttggatacacaggttatctgcagcttatagcacaagcgtttatcatcaaaagtgcttatgtataagctcacataagctatttctatagcaaa 29168157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 26215375 - 26215447
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||| ||||||||||||| | ||||||| | ||| || | |||| |||||||||| |||||||||||||    
T  26215375 cctgtttgtataaacaacttattttcagcttatagcacgagcgcttataatgataagcgcttatgtataagct 26215447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 40859885 - 40859837
Alignment:
Q  223 gcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||| | |||||||| ||||||||||||||| |||||||||||||    
T  40859885 gcagcttatagcacaagtgcttatcatgataagcgcttatgtataagct 40859837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 29819080 - 29819026
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataa 254  Q
    ||||||||||||||||||||| ||||||||| | || ||| | ||||||||||||    
T  29819080 ctgtttggataaacaacttatttgcagcttatagcaaaagggcttatcatgataa 29819026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 35534810 - 35534725
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||| ||||| ||||| ||||||||| | |||| | | ||||||| ||||||| | ||| ||||||||||||||| |||||    
T  35534810 cctgtttggaaaaacagcttatttgcagcttatagcacaggcgtttatcattataagcgct-atgcataagcttacataagatattt 35534725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 18133555 - 18133588
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttaca 232  Q
    |||||||||||||||||||||| |||||||||||    
T  18133555 cctgtttggataaacaacttatttgcagcttaca 18133588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 40980999 - 40981056
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagc 256  Q
    |||||||||||||||| ||||| ||||||||| | |||||| | ||||| ||||||||    
T  40980999 cctgtttggataaacagcttatttgcagcttatagcacaagcgcttatcttgataagc 40981056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 50681288 - 50681204
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||| |  |||||| | ||||||   ||||||||||||||||||||||||||||||||| |||||||||    
T  50681288 tgtttggataaacaacttatttatagcttatagcacaagaacttatcatgataagcgtttatgtataagcttacaaaagctattt 50681204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 50662921 - 50662851
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||||||||||||||| ||||||||| | |||||| | |||||||||| ||||||||||||||||||    
T  50662921 tgtttggataaacaacttatttgcagcttatatcacaagagcttatcatgatgagcgtttatgtataagct 50662851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 31851358 - 31851419
Alignment:
Q  234 cacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    |||||||| |||||||||||||| |||||||| ||||| |||||||||||||  ||||||||    
T  31851358 cacaagtgcttatcatgataagcatttatgtagaagctcacataagctatttttataacaaa 31851419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 3155486 - 3155554
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||||||||||||| ||||||||| |  ||||| | |||||||||||||| | ||||||||||||    
T  3155486 tttggataaacaacttatctgcagcttatagtacaagcgcttatcatgataagcatgtatgtataagct 3155554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 22030117 - 22030160
Alignment:
Q  243 ttatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  22030117 ttatcatgataagcgcttatgtataagctcacataagctatttc 22030160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 17204008 - 17204089
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagct 281  Q
    ||||||||||||||||||||| ||||||||| |  |||||   |||||| ||||| || |||||| | ||||||||||||||    
T  17204008 ctgtttggataaacaacttatttgcagcttatagaacaagcacttatcacgataaccgcttatgtgttagcttacataagct 17204089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 35572023 - 35571951
Alignment:
Q  198 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||| |||||||||| ||||| ||||||||| | |||||||| ||||||||| ||||  |||||||||||||    
T  35572023 tcctgtatggataaaca-cttatttgcagcttatagcacaagtggttatcatgacaagcacttatgtataagct 35571951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 43505829 - 43505911
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||| |||| |||| | |||||  |   ||||||||||||  |||||||||||||| ||||||||||||    
T  43505829 tgtttggataaacaacttatttgcaacttatagcacaaacgc--atcatgataagcacttatgtataagcttgcataagctattt 43505911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 25904414 - 25904325
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagc----gtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||| || ||||| ||| | ||||||   ||||||||||||||    | |||| ||||||||||||||||||||||    
T  25904414 ctgtttggataaacaactcatttgcagattatagcacaagcacttatcatgataagcatgtgattatatataagcttacataagctattt 25904325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 44797761 - 44797817
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataag 255  Q
    |||||||||||||||||||||| |||| |||| | |||||| |||||||||| ||||    
T  44797761 cctgtttggataaacaacttatttgcaacttatagcacaagcgattatcatggtaag 44797817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 2987069 - 2987140
Alignment:
Q  201 tgtttggataaacaactta-tatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||||||| ||| | ||||||||| |||| ||||| ||||||||||||||  |||| ||||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagcacttatttataagct 2987140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 11389407 - 11389474
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataa 268  Q
    |||||||||||||||||||| ||||| ||| | ||  |||| ||||||||||||| | ||||||||||    
T  11389407 tgtttggataaacaacttatttgcagtttatatcatgagtgcttatcatgataagtgcttatgtataa 11389474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 679136 - 679202
Alignment:
Q  203 tttggataaacaactt-atatgcagcttacaacacaagtgattatcatgataagcgtttatgtataa 268  Q
    |||||||||||||||| || || |||||| |||||| ||| |||| |||||||||| ||||||||||    
T  679136 tttggataaacaacttaatttgtagcttataacacatgtgcttataatgataagcgcttatgtataa 679202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 24169174 - 24169216
Alignment:
Q  243 ttatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||| |||| |||||||| ||||||||||||||||||    
T  24169174 ttatcatgattagcgcttatgtatgagcttacataagctattt 24169216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 39011212 - 39011178
Alignment:
Q  247 catgataagcgtttatgtataagcttacataagct 281  Q
    |||||||||||||||||||||||||| ||||||||    
T  39011212 catgataagcgtttatgtataagcttgcataagct 39011178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 44863151 - 44863081
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||||||||||||||| ||||||||| | ||||||   || |||||||||| | ||||| |||||||    
T  44863151 tgtttggataaacaacttatttgcagcttatagcacaagcacttgtcatgataagtgcttatgcataagct 44863081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 27083 - 27026
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcg 257  Q
    ||||||||||||||| ||| | ||||||||| | |||||| | |||||||||||||||    
T  27083 ctgtttggataaacatcttgtttgcagcttatagcacaagcgcttatcatgataagcg 27026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 25332656 - 25332721
Alignment:
Q  206 ggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||| |||||| |||||||||| ||||| ||| || |||||||| | | |||||||||||||    
T  25332656 ggataaacgacttatttgcagcttacgacacatgtgtttctcatgataggagcttatgtataagct 25332721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 437430 - 437370
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgttt 260  Q
    |||||||||||||| |||||| ||||||||| || |||||   ||||||||||||| ||||    
T  437430 ctgtttggataaacgacttatttgcagcttataatacaagcttttatcatgataagtgttt 437370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 4212810 - 4212858
Alignment:
Q  198 tcctgtttggataaacaacttatatgcagcttacaacacaagtgattat 246  Q
    ||||||||||||||||||||||| | ||||||| | |||||| ||||||    
T  4212810 tcctgtttggataaacaacttattttcagcttatagcacaagcgattat 4212858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 22539234 - 22539166
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    |||||||||| ||||||| ||||| ||| | || |||   ||||||||| |||||||||||||||||||    
T  22539234 tttggataaataacttatttgcaggttatagcataagcccttatcatgacaagcgtttatgtataagct 22539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 34213770 - 34213730
Alignment:
Q  198 tcctgtttggataaacaacttatatgcagcttacaacacaa 238  Q
    |||||||||||||| |||||||| ||||||||| |||||||    
T  34213770 tcctgtttggataagcaacttatttgcagcttataacacaa 34213730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 51629991 - 51630047
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagc 256  Q
    |||||| |||||||| ||||| ||  |||||||||||||||| |||| |||||||||    
T  51629991 ctgtttagataaacaccttatttgaggcttacaacacaagtgcttattatgataagc 51630047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 24626164 - 24626251
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    |||||||||||||||||||||| | ||||||| | ||||| || |||||||||| |  | ||||||||||||||||||||||||||||    
T  24626164 cctgtttggataaacaacttatttacagcttatagcacaaatgcttatcatgatgattgcttatgtataagcttacataagctatttc 24626251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 34430587 - 34430669
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctat 283  Q
    ||||| |||||||| ||||| ||||||||| | |||||||| ||||||||||| ||| |||||||||||||| ||||||||||    
T  34430587 tgtttcgataaacatcttatttgcagcttatagcacaagtgcttatcatgataggcgcttatgtataagcttccataagctat 34430669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 23063719 - 23063650
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataa 268  Q
    ||||||||||| | |||||||| |||| |||| | ||||| |||||||||||||||||||||||||||||    
T  23063719 cctgtttggattatcaacttatttgcatcttatagcacaaatgattatcatgataagcgtttatgtataa 23063650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 6538386 - 6538466
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataag 279  Q
    |||||||||||||| | ||||| ||||||||| | ||||||   |||| |||||||||| |||||||||||||| ||||||    
T  6538386 cctgtttggataaatagcttatttgcagcttatagcacaagcacttataatgataagcgcttatgtataagcttgcataag 6538466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 30926409 - 30926494
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||| ||||||||||||    |||||||| | |||||| | ||||||||||||||  ||| ||||||||||||||||||||||||    
T  30926409 cctgtttagataaacaactttg--gcagcttatagcacaagggcttatcatgataagcaattaagtataagcttacataagctatttc 30926494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 35069431 - 35069503
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||| |||||||||||||| ||||||||| | |||||| | ||||||||||||| | ||||| |||||||    
T  35069431 cctgttttgataaacaacttatttgcagcttatagcacaagcgtttatcatgataagtgcttatgcataagct 35069503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 29754245 - 29754184
Alignment:
Q  234 cacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    |||||| | ||||||||||||||| |||||||| ||||| |||||||||||| | |||||||    
T  29754245 cacaagcgcttatcatgataagcgcttatgtattagcttgcataagctattttagtaacaaa 29754184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 264250 - 264322
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||| |||| || || ||||||||| | |||||||| ||||||||||||| | |||| ||||||||    
T  264250 cctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagct 264322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 847941 - 848008
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagc 270  Q
    |||||||||||||||| | ||||||||| || |||||   ||||||| ||||||| ||||||||||||    
T  847941 tttggataaacaacttttttgcagcttataagacaagcagttatcataataagcgcttatgtataagc 848008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 6910030 - 6909987
Alignment:
Q  243 ttatcatgataagcgtttatgtataagcttacataagctatttc 286  Q
    ||||||||||||| | |||||||||| |||||||||||||||||    
T  6910030 ttatcatgataagtgcttatgtataaacttacataagctatttc 6909987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 26550355 - 26550308
Alignment:
Q  248 atgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    |||||||||  ||||||||||||||||||||||||| || ||||||||    
T  26550355 atgataagcacttatgtataagcttacataagctatctctataacaaa 26550308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 18076083 - 18076151
Alignment:
Q  217 ttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||| ||||||||| | |||||| | ||||||| ||||||  |||||||||||||| |||||| |||||    
T  18076083 ttatttgcagcttatagcacaagcgcttatcataataagcacttatgtataagcttgcataagttattt 18076151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 45263962 - 45264048
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||||||||| ||| |||||  ||||||| | ||||||||| ||||| ||| | |||||||||||||||||||||    
T  45263962 cctgtttggataaacaacttatttgcggcttatcacacaagcgcttatcatgaaaagcgcttacgcataagcttacataagctattt 45264048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 285
Target Start/End: Complemental strand, 21568828 - 21568743
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||||||||| ||| | ||||||||| | || ||||| ||||||||||||||  |||||||||||||| ||||||||||||    
T  21568828 ctgtttggataaacagcttgtttgcagcttatagcataagtgcttatcatgataagcacttatgtataagcttgcataagctattt 21568743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 18865249 - 18865166
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctatt 284  Q
    |||||||||||||||||||| ||||||||| | |||||  | ||||||||||||| |||||| |||||| ||||||||| ||||    
T  18865249 tgtttggataaacaacttatttgcagcttatagcacaaacgcttatcatgataagtgtttatttataagtttacataagttatt 18865166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 46078016 - 46078102
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||| ||||| |||||||||| |||| | |||||     |||||||||||||| ||||||||||||||||||||| |||||    
T  46078016 cctgtttggacaaacagcttatatgcaacttaaagcacaaacacatatcatgataagcgcttatgtataagcttacataagttattt 46078102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 4970941 - 4970893
Alignment:
Q  247 catgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  4970941 catgataagcggttatgtataagcttacataagctatttctatagcaaa 4970893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 33672957 - 33673029
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||||||| | |||| ||||||||| | |||||||  |||| |||||||||| |||||||||||||    
T  33672957 cctgtttggataaactatttatttgcagcttatagcacaagtatttattatgataagcgcttatgtataagct 33673029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 46139821 - 46139893
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||| |||||||||||| ||||||||| ||||||||   ||||||||||||| | |||| ||||||||    
T  46139821 cctgtttggttaaacaacttatttgcagcttataacacaagcacttatcatgataagtgattatctataagct 46139893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 7241522 - 7241451
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagc 270  Q
    ||||||||||  |||||||||| ||||| ||  |||||||||| | ||||||||||| ||||||||||||||    
T  7241522 cctgtttggacgaacaacttatttgcaggttttaacacaagtgttcatcatgataagtgtttatgtataagc 7241451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 27863898 - 27863843
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataa 254  Q
    |||||||||||||||||||||| || |||||| | |||||||| ||||||||||||    
T  27863898 cctgtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgataa 27863843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 33128626 - 33128701
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttac 274  Q
    |||||||||||||||| ||||| ||||||||||| |||||    ||||||||||||| | ||||| ||||||||||    
T  33128626 cctgtttggataaacagcttatttgcagcttacagcacaaacacttatcatgataagtgcttatgcataagcttac 33128701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 38500119 - 38500033
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||| |||||||| ||||| ||||| ||| | |||||| | ||||||||||||||| ||||||||| | ||||| ||| |||||    
T  38500119 cctgtttagataaacagcttatttgcagtttatagcacaagcgcttatcatgataagcgcttatgtatatgattacagaagttattt 38500033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 28900760 - 28900821
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgt 264  Q
    |||||||||||||||||| ||||||||| ||||||||   |||| |||||||||| ||||||    
T  28900760 tttggataaacaacttatttgcagcttataacacaagcatttattatgataagcgcttatgt 28900821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 3308452 - 3308372
Alignment:
Q  200 ctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagc 280  Q
    |||||| |||||||| ||||| || |||||| | |||||||  || |||||||||| | ||||||||||| ||||||||||    
T  3308452 ctgtttagataaacagcttatttggagcttatagcacaagtacttttcatgataagtgcttatgtataaggttacataagc 3308372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 19131239 - 19131307
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtata 267  Q
    |||||||||||||||| ||| | || |||||| | ||||||  ||||| ||||||||||||||||||||    
T  19131239 cctgtttggataaacagcttgtttgaagcttatagcacaagcaattattatgataagcgtttatgtata 19131307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 17983748 - 17983705
Alignment:
Q  253 aagcgtttatgtataagcttacataagctatttcaataacaaac 296  Q
    ||||| ||||||||||||||||||||||||||| ||||| ||||    
T  17983748 aagcgcttatgtataagcttacataagctattttaataagaaac 17983705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 18965905 - 18965858
Alignment:
Q  203 tttggataaacaacttatatgcagcttacaacacaagtgattatcatg 250  Q
    |||||||||||| |||||||| |||||| |||||||||| ||||||||    
T  18965905 tttggataaacatcttatatgtagcttataacacaagtgtttatcatg 18965858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 33553007 - 33552940
Alignment:
Q  204 ttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||||||||| |||||||||   ||||||   ||| ||||||||||| |||||||||||||    
T  33553007 ttggataaacaacttatttgcagcttattgcacaagcacttaccatgataagcgcttatgtataagct 33552940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 40196248 - 40196323
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataa 278  Q
    |||||||||||||||||||| || || ||||| |||| | | ||||||||||||||| |||  ||||||||| |||||    
T  40196248 tgtttggataaacaacttatttgtagtttacagcacatgcgcttatcatgataagcgctta--tataagcttgcataa 40196323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 46280460 - 46280374
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    ||||||||||||||||  |||| |  |||||| | |||||| | ||||||||||||||  | ||| |||||||||||||| ||||||    
T  46280460 cctgtttggataaacagtttatttatagcttatagcacaagcgtttatcatgataagcactcatgcataagcttacataatctattt 46280374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 48131228 - 48131299
Alignment:
Q  200 ctgtttggataaacaactta-tatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagct 271  Q
    ||||||||||| |||||||| | ||||||||||| || ||||| ||||||| ||||||| |||||||| ||||    
T  48131228 ctgtttggatacacaacttattttgcagcttacagcataagtgcttatcat-ataagcgcttatgtatcagct 48131299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 48140137 - 48140181
Alignment:
Q  251 ataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    ||||||| |||||||||||||| ||||||||||||  ||||||||    
T  48140137 ataagcgcttatgtataagcttgcataagctatttttataacaaa 48140181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 207747 - 207686
Alignment:
Q  234 cacaagtgattatcatgataagcgtttatgtataagcttacataagctatttcaataacaaa 295  Q
    |||||||| ||||||||||||||  |||||||||||||| |||||||||||| | |||||||    
T  207747 cacaagtgcttatcatgataagcacttatgtataagcttgcataagctattttagtaacaaa 207686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 58475 - 58540
Alignment:
Q  201 tgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtat 266  Q
    |||||||||||||||||||| ||||||||| | |||||||| || |||| ||||||  ||||||||    
T  58475 tgtttggataaacaacttatttgcagcttagagcacaagtgcttgtcataataagcacttatgtat 58540  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 285
Target Start/End: Original strand, 157976 - 158062
Alignment:
Q  199 cctgtttggataaacaacttatatgcagcttacaacacaagtgattatcatgataagcgtttatgtataagcttacataagctattt 285  Q
    |||||||||||||||| ||||| ||||||||| | |||||    |||| |||||||  | ||||| || ||||||||||||||||||    
T  157976 cctgtttggataaacagcttatttgcagcttatagcacaaacacttatgatgataattgcttatgcattagcttacataagctattt 158062  T

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